View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282_low_8 (Length: 347)
Name: NF3282_low_8
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 49807235 - 49807540
Alignment:
| Q |
12 |
agagagtggtgctgttgtgggtaatggttccggtgaaggtgaaagattgaagcatcctcttcacaacttccattttccttatttgaagtgggggaatcag |
111 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49807235 |
agagagtggtgctgttatgggtaatggttccggtgaaggtgaaagattgaagcatcctcttcacaacttccattttccttatttgaagtgggggaatcag |
49807334 |
T |
|
| Q |
112 |
cgttctctccggtgtcagaagaatcctgaaaacggggacgatccgtcgatggtgtcaccgccggagaataggatgaacagactgagaatcgatggtggtg |
211 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49807335 |
cgttctctccggtgtcagaagaatcctgaaaacggtgacgatccgtcgatggtgtcaccgccggagaataggatgaacagactgagaattgatggtggtg |
49807434 |
T |
|
| Q |
212 |
atgatgggatcgatgctatgcgtgaaaggttgatgtttgatctgaaggttgaagctggtaggatgaaagatgcgattttgaagaaggagaaagagaatgg |
311 |
Q |
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| T |
49807435 |
atgatgggatcgatgctatgcgtgaaaggttgatgtttgatctgaaggttgaagctggtaggatgaaagatgcgattttgaagaaggagaaagagaatgg |
49807534 |
T |
|
| Q |
312 |
tgctgg |
317 |
Q |
| |
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|||||| |
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| T |
49807535 |
tgctgg |
49807540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 308
Target Start/End: Original strand, 49799822 - 49799925
Alignment:
| Q |
205 |
ggtggtgatgatgggatcgatgctatgcgtgaaaggttgatgtttgatctgaaggttgaagctggtaggatgaaagatgcgattttgaagaaggagaaag |
304 |
Q |
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|||| |||||| ||| ||||||||||||| || ||||||| ||||| |||||| |||||| | ||||||||||||| ||||||| |||||||||| |
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| T |
49799822 |
ggtgatgatgaaggggtcgatgctatgcgggagaggttgacacttgatttgaaggccgaagctagaaggatgaaagatgtcgttttgaaaaaggagaaag |
49799921 |
T |
|
| Q |
305 |
agaa |
308 |
Q |
| |
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|||| |
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| T |
49799922 |
agaa |
49799925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 21 - 294
Target Start/End: Complemental strand, 34046592 - 34046322
Alignment:
| Q |
21 |
tgctgttgtgggtaatggttccggtgaaggtgaaagattgaagcatcctcttcacaacttccattttccttatttgaagtgggggaatcagcgttctctc |
120 |
Q |
| |
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||||||| |||||| |||||| |||||| ||| |||| |||||| || ||||||||||| |||| |||||||||||||||| |||||| |||| ||| |
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| T |
34046592 |
tgctgttatgggta-tggttcaggtgaaagtggaagaatgaagctcact-ttcacaacttcaatttaccttatttgaagtgggcgaatcaacgttacctc |
34046495 |
T |
|
| Q |
121 |
cggtgtcagaagaatcctgaaaacggggacgatccgtcgatggtgtcaccgccggagaataggatgaacagactgagaatcgatggtggtgatgatggga |
220 |
Q |
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||||| |||| | |||| |||| |||||||||||||||||||| ||| |||||| ||||| |||| ||| |||||||||||||||||||| || |
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| T |
34046494 |
aa-tgtcaaaagatttctgacaacgacgacgatccgtcgatggtgtcgttaccgaagaataagatgagcagattgataatcgatggtggtgatgatgaga |
34046396 |
T |
|
| Q |
221 |
tcgatgctatgcgtgaaaggttgatgtttgatctgaaggttgaagctggtaggatgaaagatgcgattttgaag |
294 |
Q |
| |
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|| ||| | || ||||||||||| || ||||||||||||||||||||| | ||| |||||||| ||| ||||| |
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| T |
34046395 |
tcaatgatgtgtgtgaaaggttgctgcttgatctgaaggttgaagctgaaaagataaaagatgccattatgaag |
34046322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 294
Target Start/End: Original strand, 34045913 - 34046042
Alignment:
| Q |
165 |
gtcaccgccggagaataggatgaacagactgagaatcgatggtggtgatgatgggatcgatgctatgcgtgaaaggttgatgtttgatctgaaggttgaa |
264 |
Q |
| |
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|||||| || ||||||| ||||| | | ||||||||| |||||| |||||| ||||||| |||||||||||||||| || ||||| ||||| ||||| |
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| T |
34045913 |
gtcaccaccagagaataagatgagaaaaatgagaatcggaggtggtcatgatgaaatcgatgttatgcgtgaaaggttgttggttgatatgaagtttgaa |
34046012 |
T |
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| Q |
265 |
gctggtaggatgaaagatgcgattttgaag |
294 |
Q |
| |
|
| || | ||| ||| |||||||||||||| |
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| T |
34046013 |
gatgaaaagataaaatatgcgattttgaag |
34046042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 34045779 - 34045859
Alignment:
| Q |
29 |
tgggtaatggttccggtgaaggtgaaagattgaagcatcctctt-cacaacttccattttccttatttgaagtgggggaatc |
109 |
Q |
| |
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|||||||||||||||| |||||||| ||| ||| || ||| || ||||||||| |||| |||| ||||||||||||||||| |
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| T |
34045779 |
tgggtaatggttccggggaaggtgacagaatgacgc-ccctattccacaacttcgatttgccttctttgaagtgggggaatc |
34045859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 318
Target Start/End: Complemental strand, 36172222 - 36172109
Alignment:
| Q |
205 |
ggtggtgatgatgggatcgatgctatgcgtgaaaggttgatgtttgatctgaaggttgaagctggtaggatgaaagatgcgattttgaagaaggagaaag |
304 |
Q |
| |
|
|||| |||||| ||| || |||||||||| || ||||||| |||||||||||| |||| | | |||||||||||||| ||| | ||||||||||||| |
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| T |
36172222 |
ggtgatgatgaaggggtcaatgctatgcgggagaggttgacacttgatctgaaggccgaaggtagaaggatgaaagatgccattctaaagaaggagaaag |
36172123 |
T |
|
| Q |
305 |
agaatggtgctggt |
318 |
Q |
| |
|
||||||||| |||| |
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| T |
36172122 |
agaatggtgttggt |
36172109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 313
Target Start/End: Complemental strand, 2374461 - 2374353
Alignment:
| Q |
205 |
ggtggtgatgatgggatcgatgctatgcgtgaaaggttgatgtttgatctgaaggttgaagctggtaggatgaaagatgcgattttgaagaaggagaaag |
304 |
Q |
| |
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|||| |||||| ||| | ||||||||||| || ||||||| ||||| ||||||| |||| | | ||||| | |||||| ||| |||||||||| |||| |
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| T |
2374461 |
ggtgatgatgaaggggttgatgctatgcgggagaggttgacacttgatatgaaggtcgaaggtagaaggattagagatgccattatgaagaaggacaaag |
2374362 |
T |
|
| Q |
305 |
agaatggtg |
313 |
Q |
| |
|
||||||||| |
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|
| T |
2374361 |
agaatggtg |
2374353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 2374647 - 2374599
Alignment:
| Q |
43 |
ggtgaaggtgaaagattgaagcatcctcttcacaacttccattttcctt |
91 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| |||| ||||||||| |
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|
| T |
2374647 |
ggtgaaggtgaaagagtgaaggctcctcttcacagcttcaattttcctt |
2374599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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