View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3283_high_1 (Length: 5305)
Name: NF3283_high_1
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 1189; Significance: 0; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1189; E-Value: 0
Query Start/End: Original strand, 3160 - 4683
Target Start/End: Complemental strand, 1588415 - 1586882
Alignment:
| Q |
3160 |
tgaatgcttccacggacaagtgagacaaatggtccatcatgaacaatggataacttacaatagatgttgaaggttcgttagatcgaatgatacactattc |
3259 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1588415 |
tgaatgcttccacggacaagtgagataaatggtccatcatgaacaatggataacttacgatagatgttgaaggttcgttagatcgaatgatacactattc |
1588316 |
T |
|
| Q |
3260 |
atacaaaatatatttttctcaaacatcgcctactcttgactnnnnnnncttcattgaattattgactcgttgttgaaccctcggtcgtgttcttcgccac |
3359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1588315 |
atacaaaatatatttttctcaaacatcgcctactcttgactaaaaaaacttcattgaattattgactcgttgttgaaccttcggtcgtgttcttcgccac |
1588216 |
T |
|
| Q |
3360 |
tttcgttaaaaatggtcttatcattcaatttctctactaaaaccccaattgttgttgtggtttcaatttcttctgtatttgctccctcttttttcattct |
3459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1588215 |
tttcgttaaaaatggtcttatcattcaatttctctactaaaaccccaattgttgttgtggtttcaatttcttctgtatttgctccctcttttttcattct |
1588116 |
T |
|
| Q |
3460 |
ctgcaagttgtgaccaaatttttatgcaacaaacattttaaaactgaaaaaagacatagcattgatgaatatcgcaattacatagtaaagagaagagaat |
3559 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1588115 |
ctgcaagttgtgaccaaatttgtatgcaacaaacattttaaaactgaaaaaagacatagcattgatgaatatcgcaattacatagtaaagagaagagaat |
1588016 |
T |
|
| Q |
3560 |
atgaggagaagatggaggatgatgagaaagaaatgagttttgaattgattaaatggtataattagatcaagtagggtaagaaccttagtactcctaacat |
3659 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1588015 |
atgaggagaagatggaggatgatgagaaagaaatgagttttgaattgattaaatggtaaaattagatcaagcagggtaagaaccttagtactcctaacat |
1587916 |
T |
|
| Q |
3660 |
aatactactaatattggcgtaggtcatcatnnnnnnnnnnnnntacatcattagagatgatgcaaagtttcactttcaacatcaaaccatggacaattta |
3759 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1587915 |
aatactactaatattggcgtaggtcatcat-----aaaaaaaatacatcattagagatgatgcaaattttcactttcaacatcaaaccatggacaattta |
1587821 |
T |
|
| Q |
3760 |
ttccccttgtccatgatnnnnnnntttccttaaataaatgctactttatgtcttcaaaagtttgcaagttgtgtgagataattttgggtgcctcataggg |
3859 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1587820 |
ttcctcttgtccatgataaaaaaaattccttaaataaatgctactttatgtcttcaaaagtttgcaagttgtgtgagataattttgggtgcctcataggg |
1587721 |
T |
|
| Q |
3860 |
ctaatagaatctgagtgtgaactactatgccgaaaacatggggagtggcacgactacagtagataacctcagccagaataaaaaatgtcacccaatcaga |
3959 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1587720 |
ctaatagaatctgagtgtgaactactatgccgaaaacatggggagtggcacgactacagtagataacctcagccagaataaaaaatgtcacccaatcaga |
1587621 |
T |
|
| Q |
3960 |
atggttttgaaagggacaaaaagacagacaacacatccaattatatcagtgaaagagaatgttgactgaattagaagaatctcacagccagtgatatatg |
4059 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1587620 |
atggttttgaaagggacaaaaagacagacaacacatccaattatatcagtgaatgagaatgttgactgaattagaagaatctcacagccagtgatatatg |
1587521 |
T |
|
| Q |
4060 |
ccaacagtcgtttaccttttttgtatcattatgctgttcacagttgtctactcttccataccatattaagaaatctttctttgctcctcccatttatatc |
4159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1587520 |
ccaacagtcgtttaccttttttgtatcattatgctgttcacatttgtctactcttccataccatattaagaaatctttctttgctcctcccatttatatc |
1587421 |
T |
|
| Q |
4160 |
ctctaaca--------------aaggaaaatannnnnnnaagaagctaaattagctcacttaaattgacactgaagagaatcgaaattaaaattttgagg |
4245 |
Q |
| |
|
|||||||| |||||||||| |||||| ||||||||||| |||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
1587420 |
ctctaacaaaaatcatgatatgaaggaaaatatttttttaagaagttaaattagctcgcttaaattgacattgaagagaatttaaattaaaattttgagg |
1587321 |
T |
|
| Q |
4246 |
aagagtacactcttaagtctcaagtcaatatcaacaggccaactcaagtggattaagaaaatgttcttcctaattggtgcccggagacattagttaagaa |
4345 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1587320 |
aatagtacactcttaagtctcaagtcaatatcaacaggccaactcaagtgggttaggaaaatgttcttcctaattggtgccccgagacattagttaagaa |
1587221 |
T |
|
| Q |
4346 |
atcgacaaatacaaattttgtttataaaatattagaaaatattatttttaatcaattaatgattacactactttttatgaaaacttagtttagatactta |
4445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1587220 |
atcgacaaatacaaattttgtttataaaatattagaagatattatttttaatcaattaatgattacactac-ttttatgaaaacttagtttagatactta |
1587122 |
T |
|
| Q |
4446 |
accaatctaatcgaacactcgttagcattctttgtttataaatgatcgatgttaacnnnnnnnngtatgccacctt---nnnnnnnnnntcctgagataa |
4542 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
1587121 |
accaatgtaatcgaacactcgttagcattctttgtttataaatgatcgatgttaac-tttttttgtatgccaccttaaaaaaatatatatcctgagataa |
1587023 |
T |
|
| Q |
4543 |
atatgtaatattgtaggaaatgttaaagaatgttcttaggatattggttgatgaagcaaaatagaaatattttgttggaaaatattgaaaagtaacaaat |
4642 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1587022 |
atctgtaatattgtaggaaatgttaaagaatgttcttaggatattggttgatgaagcaaaatagaaatattttgttggaaaatattgaaaagtaacaaat |
1586923 |
T |
|
| Q |
4643 |
tcaacnnnnnnnaaaaatttaaaagttgtaattttcaagtc |
4683 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
1586922 |
tcaactttttttaaaaatttaaaagttgtaatttttaagtc |
1586882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 1010; E-Value: 0
Query Start/End: Original strand, 30 - 1199
Target Start/End: Complemental strand, 1591709 - 1590542
Alignment:
| Q |
30 |
gtgtctatatattagggggaaacctagctatatggataaataaatttattgattacaaataatttttgtcgtgttgaaaataaatacataaccttatatc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1591709 |
gtgtctatatattagggggaaacctagctatatggataaataaatttattgattacaaataatttttgtcgtgttgaaaataaatacataaccttatatc |
1591610 |
T |
|
| Q |
130 |
atttgcatataaaatttgactaaatagaaaagtactaaaaaatgccttttaagggtgtcaattattcccaatgatgagtacctaacgcaaacgggaacag |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1591609 |
atttgcatataaaatttgactaaatagaaaagtactaaaaaatgccttttaagggtgtcaattattcccaatgatgagtacctaacgcaaacgggaacag |
1591510 |
T |
|
| Q |
230 |
ctacaaagggagccccacaatcttcacgtggacatctcgtgtgattgattcacaaattattgtagctaagctagatagataccannnnnnncctcctcta |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1591509 |
ctacaaagggagccccacaatcttcacgtggacatctcgtgtgattgattcacaaattattgtagctaagctagatagataccatttttttcctcctcta |
1591410 |
T |
|
| Q |
330 |
atannnnnnngttaaataaataatattagattccctaggctctctctagcacacaacatacacaatccaaaagcaaggcctgcatcaaaattaaaccaca |
429 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1591409 |
atatttttttgttaaataaataatattagattccctaggctctctctagcacacaacatacacaatccaaaagcaaggcctgcatcaaaattaaaccaca |
1591310 |
T |
|
| Q |
430 |
aaaagatactctctctctatcaaaataaacccatggtgcaagccctagggtcaccccatatcatatgtaatgtaatcacattataaaaaacgctatgccc |
529 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1591309 |
aaaagatactctctct--atcaaaataaacccatggtgcaagccctagggtcaccccatatcatatgtaatgtaatcacattataaaaaacgctatgccc |
1591212 |
T |
|
| Q |
530 |
c-acaaaactatagattctatatgccaaagtgaaacatgcagcatatacatcactttcaattcttccacttcaaa-caaagagtattttcctcttgtttt |
627 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1591211 |
ccacaaaactatagattctatatgccaaagtgaaacatgcagcatatacatcactttcaattcttccacttcaaaacaaagagtattttcctcttgtttt |
1591112 |
T |
|
| Q |
628 |
attttagcctcgtatccacttttgacacatatatataccccttcataccctctcataattcctcatccaaaaccagaagaaagnnnnnnnnttcattcat |
727 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1591111 |
attttagcctcgtatccacttttgacacatatatataccccttcataccctctcataattcctcatccaaaaccagaagaaa--aaaaaaattcattcat |
1591014 |
T |
|
| Q |
728 |
tttcaatctcacttctctcttcttctcttgtgctatatacctcttgcttaatctttgtctttacnnnnnnnnnnnnnnnnnnntatgtctggggtttggg |
827 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1591013 |
tttcaatctcacttctctcttcttctcttgtgctatatatctcttgcttaatctttgtctttacaaaaacaaaacaaaaaaaatatgtctggggtttggg |
1590914 |
T |
|
| Q |
828 |
tgttcaagaatggcgtgtttcgattggtcgagaatcctcaagcagaatcggaagtaaggcatgggaagaggaagatgttggttcacttgcccacagggga |
927 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1590913 |
tgttcaagaatggcgtgtttcgattggtcgagaatcctcaagcagaatcggaagtaaggcatgggaagaggaagatgttggttcacttgcccacagggga |
1590814 |
T |
|
| Q |
928 |
agtggtaacttcttatgcttttcttgagagaatattgattggtttaggttgggagaggtactatgatggagatgttgatttataccaatttcataaacac |
1027 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1590813 |
agtggtaacttcttatgcttttcttgagagaatattgattggtttaggttgggagaggtactatgatggagatgttgatttataccaatttcataaacac |
1590714 |
T |
|
| Q |
1028 |
tgttctattgacctaatttctctacctaaagatttctccaagttcaattccatacatatgtatgatattgtcataaaaaaccctaatgttttccatgtta |
1127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1590713 |
tgttctattgacctaatttctctacctaaagatttctccaagttcaattccatacatatgtatgatattgtcataaaaaaccctaatgttttccatgtta |
1590614 |
T |
|
| Q |
1128 |
gggataagtggtaattttggatgctaattttggatgctactactagctaagtagctagctccttcatttatc |
1199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1590613 |
gggataagtggtaattttggatgctaattttggatgctactactagctaagtagctagctccttcatttatc |
1590542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 1227 - 2149
Target Start/End: Complemental strand, 1590514 - 1589596
Alignment:
| Q |
1227 |
atgacgctggtgtgtttttctatacatatatatatctagagttttgtggaaactctagtgataaagcttgttgatttctttttggtttatgttcatagag |
1326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1590514 |
atgacgctggtgtgtttttctatacatatatatatctagagttttgtggaaactctagtgataaagcttgttgatttctttttggtttatgttcatagag |
1590415 |
T |
|
| Q |
1327 |
aggggaataagtaaaatatagatgattgatggtgttgatgtgtttgacttgactagtgtatatttgcttggagtgctctttgtaacatattgagtattgg |
1426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1590414 |
aggggaataagtaaaatatagatgattgatggtgttgatgtgtttgacttgactagtgtatatttgcttggagtgctctttgtaacatattgagtattgg |
1590315 |
T |
|
| Q |
1427 |
tttctaataatatctttatttcttgcatttcaataatttcccttcttttttgatttctcataaaggcttnnnnnnnntctcatctatatatatgatcttt |
1526 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
1590314 |
tttctaataatatctttatttcttgcatttcaataatttcccttcttttttgatttctcataaaggcttaaaaaaaatctcatctatat-----atcttt |
1590220 |
T |
|
| Q |
1527 |
gaccggagacaattttcctaatttgatacgaattctgatattcctgcgattagaagttggtcattgcatcaatggactagatcattgaatgaatttgatg |
1626 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1590219 |
gaccggagacaattttcctaatttaatacgaattttgataatcctgcgattagaagttggtcattgcatcaatggactagatcattgaatgaatttgatg |
1590120 |
T |
|
| Q |
1627 |
gccaacctctgatcgcattataggaaatcagaattctaataaagagaaagggagaatggattttatcaacaaaaaataatagagaatgaagaagaaattt |
1726 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1590119 |
gccaacctctaatcgcattataggaaatcagaattctaataaagagaaagggagaatggattttatcaacaaaaaataatagagaatgaagaagaaattt |
1590020 |
T |
|
| Q |
1727 |
taatatcttgatggcttaatttagctattactaatagtttatatct-gggagaaattgagatgagagagaaaagtccaacgtttttcnnnnnnnnntcca |
1825 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
1590019 |
taatatcttgatggcttaatttagctattactaatagtttatatctggggagaaattgagatgagagagaaaagtccaatgtttttcaaaaaaaaatcca |
1589920 |
T |
|
| Q |
1826 |
agtgtcaatatatgagagtatatttgtttcctgattt-gaaaagccatttcagcgcaaactgaaccgaagaaaattgagcacagaaaagaaaatacagta |
1924 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |||||| |||||||||||||||| |
|
|
| T |
1589919 |
agtgtcaatatatgagagtatatttgtttcctgatttggaaaagccatttcagcacaaactgaacagaagaaaattcagcacaaaaaagaaaatacagta |
1589820 |
T |
|
| Q |
1925 |
catgatatgattggttccatgaaacataagtagtattgctatgagttttgatgagcacgggggccacctgttcacgttctcagaaggtaagagaattaat |
2024 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1589819 |
catgatatgattggttccatgaaacgtaagtagtattactatgagttttgatgagcacgggggccacctgttcacgttctcagaaggtaagagaattaat |
1589720 |
T |
|
| Q |
2025 |
tggtcacatgttatcttttctcaaaatgtatatgcaatttagtgnnnnnnnnnactataaataagcaattatagagttaatttgaaatatttaatcaatt |
2124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1589719 |
tggtcacatgttatcttttctcaaaatgtatatgcaatttagag-tttattttactataaataagcaattatagagttaatttgaaatatttaatcaatt |
1589621 |
T |
|
| Q |
2125 |
tttctaaaatgaagtggcaaataca |
2149 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
1589620 |
tttctaaaatgaagtggcaaataca |
1589596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 2382 - 3130
Target Start/End: Complemental strand, 1589365 - 1588605
Alignment:
| Q |
2382 |
taataatacagacatgttttcgcttttattagtttttctcattcatct-gtgtggggaacagttttcagtatatttgttgttnnnnnnnnnnnn--taag |
2478 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||| | ||||||||| ||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
1589365 |
taataatgcagacatgttttcgcttttattggttttcc-cattcatcttgtgtggggaaccgttttcagtatatttgttgttaagaaaataaaaaataag |
1589267 |
T |
|
| Q |
2479 |
acagtcatgtattatagaaagagcaatcctaatgacaaaattacatctcattacaaagctagtaaacaaaattagagaaattttttgataaataaaatac |
2578 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1589266 |
acagtcatgtattatagaaagagcaatcctaatgacaaaattacatctcattacaaagctagtaaacaaaattagagaaattttttgataaataaaatac |
1589167 |
T |
|
| Q |
2579 |
acacggattgatattttgtaactcatgtgcatgtgttataattt-----ggtgaatatttgtaaaatgaaaagcaaaactaaaaatagcttttatgaggg |
2673 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1589166 |
acacggattgatattttgtaactcatgtgcatgtgttataatttaatttggtgaatatttgtaaaatgaaaagcaaaactaaaaatagcttttatgaggg |
1589067 |
T |
|
| Q |
2674 |
agaacaaaatagttaaagttactttaaatcccattaccctcatactatttaaaaatgaaattaataaaagaaaaggttctaaagtagtaagaaaagtagc |
2773 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1589066 |
agaacaaaatacttaaagttactttaaatcccattaccctcataatatttaaaaatgaaattaataaaagaaaaggttctaaagtagtaagaaaagtagc |
1588967 |
T |
|
| Q |
2774 |
aattattctact-aacaataaattgattttaaggggtaagtgatttcggccctttaagaagtggtaagaggttagatatatgactctttatatgg-aaaa |
2871 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1588966 |
aattattctactaaacaataaattgattttaaggggtaagtgatttcggccctttaagaagtggtaagaggttagatatatgactctttatatggaaaaa |
1588867 |
T |
|
| Q |
2872 |
aatttgattgcaagagaaaattcactttgtatattcaacagattctctaacgaagattatagtcatcgttaaatagacatggaaaatttttgtctataat |
2971 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
1588866 |
aatttgattgcaagagaaaattcactttgtatattcaagagattctctaacgtagattatagtcatcgttaaataaagatggaaattttttgtctataat |
1588767 |
T |
|
| Q |
2972 |
ataataact---aaaaatactaacaatattcttccaaattttctctataaaaaagatttctatcttgtcatattcttcctctttgcacttatagtaagat |
3068 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1588766 |
ataataactaaaaaaaatactaacaatattcttccgaatttcctctataaaaaagatttctatcttgccatattcttcctctttgcacttatagtaagat |
1588667 |
T |
|
| Q |
3069 |
tctatataatcaagtttaaagaaaaccaaatagatattttcgccaaccttgatataagaagg |
3130 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
1588666 |
tctatataattaagtttaaagaaaaccaaatagatatttccgccaaccatgatataagaagg |
1588605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 4714 - 5288
Target Start/End: Complemental strand, 1586881 - 1586307
Alignment:
| Q |
4714 |
aaccatatatagagaagaagaaataatgatagcaacgcgagattgattgtaaatccacagatgataaaatcttgttttggataaggatatttatttgaaa |
4813 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1586881 |
aaccatatatagagaagaagaaataatgatagcaacgcgagattgattgtaaatccacacatgatacaatcttgttttggataaggatatttatttgaaa |
1586782 |
T |
|
| Q |
4814 |
aagttttggattggcaattagaaatgaatgtacgatgttaaggattacaaaactggaagagaggagatggagttcacgtgaggttgattgtgaaaggtag |
4913 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1586781 |
aagttttggattggcaattagaaatgaatgtacgatgttaaggattacaaaactggaagagaggagatggagttcacgtgaggttgattgtgaaaggtag |
1586682 |
T |
|
| Q |
4914 |
tggtcactgaccacactagtttagccttggttgccatgtgcttcttgtagaatctaaactttgtgaaaacgaaaacctcagccattaggctcacagaatt |
5013 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1586681 |
tggtcactgaccacactagtttagccttggttgccatgtgcttcttgtagaatctaaactttgtgaaaacgaaaacctcagccattagcctcacagaatt |
1586582 |
T |
|
| Q |
5014 |
ggattttctttttggctttggccccatcaataatttcgtgaaagattgttcctttgatttgaaagaaataaaataaaacaataactaagttttttatttt |
5113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1586581 |
ggattttctttttggctttggccccatcaataatttcgtgaaagattgttcctttgatttgaaagaaataaaataaaacaataactaagttttttatttt |
1586482 |
T |
|
| Q |
5114 |
atcctgttgttctgtctgtgtgtccatataaagatgaaatttgtctatatttcactacactttgaaaatgtatttatttagaaccacgttttttagtcaa |
5213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1586481 |
atcctgttgttctgtctgtgtgtccatataaagatgaaatttgtctatatttcactacactttgaaaatgtatttatttagaaccacgttttttagtcaa |
1586382 |
T |
|
| Q |
5214 |
aacatattttcttttataaaacaggttgattcaataactcggggaggaataccgctagcatcacatatacttcat |
5288 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1586381 |
aacatattttcttttataaaacaggttgattcagtaactcggggaggaataccgctagcatcacatatacttcat |
1586307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 186; E-Value: 2e-99
Query Start/End: Original strand, 2169 - 2386
Target Start/End: Complemental strand, 1589607 - 1589390
Alignment:
| Q |
2169 |
gtggcaaatacattacatctcttttctatataatactccctcaacgttttttacataagacaaattgatcaactaaaattgatgtatttagttcataata |
2268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| || || |||||||||||||||| |
|
|
| T |
1589607 |
gtggcaaatacattacatctcttttctatataatactccctcaatgttttttacaaaagacaaattgatcaactaaagttaatatatttagttcataata |
1589508 |
T |
|
| Q |
2269 |
tagattaaatacattaacttttgtatactcatatgtttcttataaaaagaatccgaaggagtggtatggtcttgtcacataactttctcacttgtgaaat |
2368 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1589507 |
tagattaaatacattaacttttgtttactcatatgtttcttataaaaaaaatccgaaggagtggtatggtcgtgtcacataactttctcacttgtgaaat |
1589408 |
T |
|
| Q |
2369 |
agtagctatgtaataata |
2386 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1589407 |
agtagctatgtaataata |
1589390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 62; E-Value: 2e-25
Query Start/End: Original strand, 3041 - 3130
Target Start/End: Complemental strand, 1588593 - 1588504
Alignment:
| Q |
3041 |
ttcttcctctttgcacttatagtaagattctatataatcaagtttaaagaaaaccaaatagatattttcgccaaccttgatataagaagg |
3130 |
Q |
| |
|
|||||||| |||| | |||||||| |||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1588593 |
ttcttcctttttggaattatagtatgattctatgtgatcaagtttagagaaaaccaaatagatattttcgccaaccttgatataagaagg |
1588504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-22
Query Start/End: Original strand, 3041 - 3120
Target Start/End: Complemental strand, 1588490 - 1588413
Alignment:
| Q |
3041 |
ttcttcctctttgcacttatagtaagattctatataatcaagtttaaagaaaaccaaatagatattttcgccaaccttga |
3120 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1588490 |
ttcttcctctttgcaattatagtatgattctatg--atcaagtttaaagaaaaccaaatagatattttcgccaaccttga |
1588413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.0000000001
Query Start/End: Original strand, 2228 - 2288
Target Start/End: Original strand, 19610807 - 19610867
Alignment:
| Q |
2228 |
acaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaactt |
2288 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
19610807 |
acaaatgggtcaacaaaaattgatgtatttagttcataatatggactaaatacatcaactt |
19610867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.000000002
Query Start/End: Original strand, 2226 - 2292
Target Start/End: Original strand, 35804335 - 35804400
Alignment:
| Q |
2226 |
agacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgt |
2292 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
35804335 |
agacaaattggtcaattaaaattg-tgtatttgatccataatataaattaaatacattaacttttgt |
35804400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.000000002
Query Start/End: Original strand, 2226 - 2292
Target Start/End: Complemental strand, 48051008 - 48050942
Alignment:
| Q |
2226 |
agacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgt |
2292 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||| ||||||||| | || ||||||||| |||||||| |
|
|
| T |
48051008 |
agacaaattggtcaactaaagttgatgtatttggttcataatgtggaccaaatacatttacttttgt |
48050942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.00000003
Query Start/End: Original strand, 2230 - 2282
Target Start/End: Complemental strand, 13412133 - 13412081
Alignment:
| Q |
2230 |
aaattgatcaactaaaattgatgtatttagttcataatatagattaaatacat |
2282 |
Q |
| |
|
|||||| |||| |||||||||||||||| ||||||||| |||| ||||||||| |
|
|
| T |
13412133 |
aaattggtcaattaaaattgatgtatttggttcataatctagactaaatacat |
13412081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.0000005
Query Start/End: Original strand, 4188 - 4230
Target Start/End: Original strand, 40814373 - 40814415
Alignment:
| Q |
4188 |
aagctaaattagctcacttaaattgacactgaagagaatcgaa |
4230 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
40814373 |
aagctaaattagcccacttaaattgacactagagagaatcgaa |
40814415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-22
Query Start/End: Original strand, 2216 - 2316
Target Start/End: Complemental strand, 30443843 - 30443743
Alignment:
| Q |
2216 |
tttttacataagacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaa |
2315 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
30443843 |
tttttacaagagacaaattggtcaactaaagttgatgtatttggttcataatatagaccaaatacattaacttttgttgacccatttgtttcttataaaa |
30443744 |
T |
|
| Q |
2316 |
a |
2316 |
Q |
| |
|
| |
|
|
| T |
30443743 |
a |
30443743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-17
Query Start/End: Original strand, 2216 - 2319
Target Start/End: Complemental strand, 43753852 - 43753749
Alignment:
| Q |
2216 |
tttttacataagacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaa |
2315 |
Q |
| |
|
|||||| | |||||| ||| |||||| ||| ||||||||||| ||||||||| ||||| |||||||||||||||||| |||||| ||||| ||||||| |
|
|
| T |
43753852 |
tttttataaaagacagatttatcaaccaaagttgatgtatttggttcataatgtagatcaaatacattaacttttgttgactcatttgtttattataaat |
43753753 |
T |
|
| Q |
2316 |
agaa |
2319 |
Q |
| |
|
|||| |
|
|
| T |
43753752 |
agaa |
43753749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.000000002
Query Start/End: Original strand, 4185 - 4295
Target Start/End: Original strand, 45699890 - 45700000
Alignment:
| Q |
4185 |
aagaagctaaattagctcacttaaattgacactgaagagaatcgaaattaaaattttgaggaagagtacactcttaagtctcaagtcaatatcaacaggc |
4284 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||| ||||||||||| | ||| ||| |||| ||| ||||||| ||||| ||| |||||| ||| |||| |
|
|
| T |
45699890 |
aagaagttaaattagcccacttaaattggcacacgagagaatcgaatctcaaactttaaggaggagcacactctcaagtcccaaatcaataccaataggc |
45699989 |
T |
|
| Q |
4285 |
caactcaagtg |
4295 |
Q |
| |
|
|||| |||||| |
|
|
| T |
45699990 |
caacacaagtg |
45700000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000008
Query Start/End: Original strand, 4185 - 4230
Target Start/End: Original strand, 52769945 - 52769990
Alignment:
| Q |
4185 |
aagaagctaaattagctcacttaaattgacactgaagagaatcgaa |
4230 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| |||||||||||| |
|
|
| T |
52769945 |
aagaagctaaattagcccacctaaattgacactaaagagaatcgaa |
52769990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-16; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-16
Query Start/End: Original strand, 2230 - 2292
Target Start/End: Complemental strand, 24098052 - 24097990
Alignment:
| Q |
2230 |
aaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgt |
2292 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
24098052 |
aaattggtcaactaaaattgatgtatttgattcataatatagattaaatacattaaattttgt |
24097990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.00000000003
Query Start/End: Original strand, 4185 - 4230
Target Start/End: Original strand, 45228987 - 45229032
Alignment:
| Q |
4185 |
aagaagctaaattagctcacttaaattgacactgaagagaatcgaa |
4230 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
45228987 |
aagaagctaaattagcccacttaaattgacactggagagaatcgaa |
45229032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000008
Query Start/End: Original strand, 4185 - 4230
Target Start/End: Complemental strand, 30217993 - 30217948
Alignment:
| Q |
4185 |
aagaagctaaattagctcacttaaattgacactgaagagaatcgaa |
4230 |
Q |
| |
|
|||||||| ||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
30217993 |
aagaagcttaattagcccacttatattgacactgaagagaatcgaa |
30217948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000008
Query Start/End: Original strand, 4185 - 4230
Target Start/End: Complemental strand, 41976001 - 41975956
Alignment:
| Q |
4185 |
aagaagctaaattagctcacttaaattgacactgaagagaatcgaa |
4230 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
41976001 |
aagaagctaaattagcccacttaaattgacactagagagaatcgaa |
41975956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.00000003
Query Start/End: Original strand, 4185 - 4229
Target Start/End: Complemental strand, 24046639 - 24046595
Alignment:
| Q |
4185 |
aagaagctaaattagctcacttaaattgacactgaagagaatcga |
4229 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | |||||||||| |
|
|
| T |
24046639 |
aagaagctaaattagcccacttaaattgacaccggagagaatcga |
24046595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.00000003
Query Start/End: Original strand, 2237 - 2316
Target Start/End: Complemental strand, 30774216 - 30774136
Alignment:
| Q |
2237 |
tcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtt-tcttataaaaa |
2316 |
Q |
| |
|
||||| |||||||||||||||| || || ||| ||||||||||||| ||||||||| |||||| | || ||||||||||| |
|
|
| T |
30774216 |
tcaaccaaaattgatgtatttaatttattataaagattaaatacatcaacttttgttgactcatttattatcttataaaaa |
30774136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.0000000000001; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.0000000000001
Query Start/End: Original strand, 4185 - 4230
Target Start/End: Complemental strand, 27244422 - 27244377
Alignment:
| Q |
4185 |
aagaagctaaattagctcacttaaattgacactgaagagaatcgaa |
4230 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27244422 |
aagaagctaaattagctcacttaaattaacactgaagagaatcgaa |
27244377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.0000000005
Query Start/End: Original strand, 2230 - 2317
Target Start/End: Complemental strand, 41824185 - 41824098
Alignment:
| Q |
2230 |
aaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaag |
2317 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||| |||||| |||| | || |||||||||||| |
|
|
| T |
41824185 |
aaattggtcaactaaaattgatgtatttagttcataatgatgatcaaatatattaatttttgttaactcgttcgtgtcttataaaaag |
41824098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.000000002
Query Start/End: Original strand, 4185 - 4227
Target Start/End: Original strand, 8162027 - 8162069
Alignment:
| Q |
4185 |
aagaagctaaattagctcacttaaattgacactgaagagaatc |
4227 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
8162027 |
aagaagctaaattagttcacttaaattgacactggagagaatc |
8162069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.0000001
Query Start/End: Original strand, 4185 - 4296
Target Start/End: Original strand, 7798998 - 7799108
Alignment:
| Q |
4185 |
aagaagctaaattagctcacttaaattgacactgaagagaatcgaaattaaaattttgaggaagagtacactcttaagtctcaagtcaatatcaacaggc |
4284 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| ||||||||||| | | || | ||||| ||| |||||| ||||| |||| ||||| || |||| |
|
|
| T |
7798998 |
aagaagctaaattagc-cacttaaattggcactggagagaatcgaatctgagatctcgaggaggagcacactcccaagtcccaagccaataccaccagga |
7799096 |
T |
|
| Q |
4285 |
caactcaagtgg |
4296 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
7799097 |
caacccaagtgg |
7799108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.0000001
Query Start/End: Original strand, 4381 - 4451
Target Start/End: Original strand, 19050031 - 19050104
Alignment:
| Q |
4381 |
aaaatattatttttaatcaattaatgattacactactttt---tatgaaaacttagtttagatacttaaccaat |
4451 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||||| |||||| | ||||||||| |||||||| |||||||||| |
|
|
| T |
19050031 |
aaaatattatttttgatcaagtaataattacaccacttttttatgtgaaaacttggtttagatgcttaaccaat |
19050104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.0000001
Query Start/End: Original strand, 4193 - 4296
Target Start/End: Complemental strand, 35916192 - 35916089
Alignment:
| Q |
4193 |
aaattagctcacttaaattgacactgaagagaatcgaaattaaaattttgaggaagagtacactcttaagtctcaagtcaatatcaacaggccaactcaa |
4292 |
Q |
| |
|
|||||||| |||||||||||||| || ||| |||||| | | || ||||||| || |||||||||| ||||||||||||| || ||| ||||| ||| |
|
|
| T |
35916192 |
aaattagcccacttaaattgacatcgaggaggatcgaatctgagatcttgaggaggaacacactcttaaatctcaagtcaataccaccagaccaacccaa |
35916093 |
T |
|
| Q |
4293 |
gtgg |
4296 |
Q |
| |
|
|||| |
|
|
| T |
35916092 |
gtgg |
35916089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.0000005
Query Start/End: Original strand, 4185 - 4235
Target Start/End: Original strand, 3677315 - 3677365
Alignment:
| Q |
4185 |
aagaagctaaattagctcacttaaattgacactgaagagaatcgaaattaa |
4235 |
Q |
| |
|
|||||||||||||| |||||||||||||| || | ||||||||||| |||| |
|
|
| T |
3677315 |
aagaagctaaattaactcacttaaattgataccggagagaatcgaacttaa |
3677365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.0000005
Query Start/End: Original strand, 4185 - 4275
Target Start/End: Complemental strand, 4881819 - 4881729
Alignment:
| Q |
4185 |
aagaagctaaattagctcacttaaattgacactgaagagaatcgaaattaaaattttgaggaagagtacactcttaagtctcaagtcaata |
4275 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| | ||| |||||| ||||| ||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
4881819 |
aagaagttaaattagctcacctaaattgacattagggagcatcgaatctaaaacattgaggaggagaacactcccaagtctcaagtcaata |
4881729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.000000000002
Query Start/End: Original strand, 2215 - 2282
Target Start/End: Complemental strand, 21873174 - 21873107
Alignment:
| Q |
2215 |
ttttttacataagacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacat |
2282 |
Q |
| |
|
||||||| | || |||||||||||||||||||||||| |||||| ||||||| |||||| |||||||| |
|
|
| T |
21873174 |
ttttttataaaaaacaaattgatcaactaaaattgatttatttaattcataacatagatcaaatacat |
21873107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000008; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000008
Query Start/End: Original strand, 2215 - 2289
Target Start/End: Complemental strand, 27567596 - 27567522
Alignment:
| Q |
2215 |
ttttttacataagacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttt |
2289 |
Q |
| |
|
||||||| | |||| ||||||||| |||||||||||| ||||| |||||||||||||| |||||||| |||||| |
|
|
| T |
27567596 |
ttttttataaaagataaattgatcgactaaaattgatatatttggttcataatatagaccaaatacatcaacttt |
27567522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.0000000001
Query Start/End: Original strand, 2228 - 2316
Target Start/End: Complemental strand, 21485038 - 21484951
Alignment:
| Q |
2228 |
acaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaa |
2316 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| ||||||||| |||| ||||||||| || |||| | | ||||| | ||||||||||||| |
|
|
| T |
21485038 |
acaaattggtcaaccaaaattgatgtatttggttcataatgtagactaaatacatcaatttttttgt-ctcatttatttcttataaaaa |
21484951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000008
Query Start/End: Original strand, 4185 - 4230
Target Start/End: Original strand, 11492035 - 11492080
Alignment:
| Q |
4185 |
aagaagctaaattagctcacttaaattgacactgaagagaatcgaa |
4230 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
11492035 |
aagaagctaaattagcccacccaaattgacactgaagagaatcgaa |
11492080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000008
Query Start/End: Original strand, 4333 - 4421
Target Start/End: Original strand, 23425258 - 23425347
Alignment:
| Q |
4333 |
cattagttaagaaatcgacaaatacaaattttgtttataaaatattaga-aaatattatttttaatcaattaatgattacactacttttt |
4421 |
Q |
| |
|
|||| ||||||||||| | ||||| ||||||||| | ||||||| ||| |||| |||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
23425258 |
cattggttaagaaatccataaataaaaattttgtctcaaaaatataagataaatgttatttttgatcaaataatgattacacaacttttt |
23425347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000008
Query Start/End: Original strand, 4333 - 4428
Target Start/End: Complemental strand, 32881231 - 32881139
Alignment:
| Q |
4333 |
cattagttaagaaatcgacaaatacaaattttgtttataaaatattagaaaatattatttttaatcaattaatgattacactactttttatgaaaa |
4428 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| | ||||||| || ||||||||||| ||||| | |||||||||| || |||||| |||| |
|
|
| T |
32881231 |
cattagttaagaaatctacaaataaaaattttgtcttaaaaatat---aagatattattttttatcaagttatgattacacaacattttattaaaa |
32881139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.0000001
Query Start/End: Original strand, 4187 - 4230
Target Start/End: Original strand, 3129828 - 3129871
Alignment:
| Q |
4187 |
gaagctaaattagctcacttaaattgacactgaagagaatcgaa |
4230 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
3129828 |
gaagctaaattagcccacttaaattgacactagagagaatcgaa |
3129871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.0000001
Query Start/End: Original strand, 2242 - 2317
Target Start/End: Complemental strand, 29642904 - 29642829
Alignment:
| Q |
2242 |
taaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaag |
2317 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| |||||| ||||| |||||| || || ||| |||||||||||| |
|
|
| T |
29642904 |
taaaatagatgtatttagttaataatatagactaaatatattaatttttgttgaccaatttgtctcttataaaaag |
29642829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000008; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000008
Query Start/End: Original strand, 2230 - 2316
Target Start/End: Original strand, 47678825 - 47678911
Alignment:
| Q |
2230 |
aaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaa |
2316 |
Q |
| |
|
|||||| ||||||||||||||||||||| || ||||| ||||| |||||||||| |||||| |||||| | ||||||||||||| |
|
|
| T |
47678825 |
aaattggtcaactaaaattgatgtatttgatttataatgtagatcaaatacattagtttttgttgactcatttatttcttataaaaa |
47678911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.00000000003
Query Start/End: Original strand, 2231 - 2316
Target Start/End: Original strand, 10048533 - 10048618
Alignment:
| Q |
2231 |
aattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaa |
2316 |
Q |
| |
|
||||| |||||||||||| |||||||| ||||| ||||||| |||||||| ||||||||| | |||| ||||||||||||||| |
|
|
| T |
10048533 |
aattggtcaactaaaattaatgtatttggttcaggatatagaccaaatacatcaacttttgttgattcatttgtttcttataaaaa |
10048618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000005
Query Start/End: Original strand, 2243 - 2290
Target Start/End: Complemental strand, 17268115 - 17268068
Alignment:
| Q |
2243 |
aaaattgatgtatttagttcataatatagattaaatacattaactttt |
2290 |
Q |
| |
|
||||||||||||| | ||||||||||||||| |||||||||||||||| |
|
|
| T |
17268115 |
aaaattgatgtatgtggttcataatatagatcaaatacattaactttt |
17268068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000008
Query Start/End: Original strand, 4185 - 4230
Target Start/End: Complemental strand, 43124734 - 43124689
Alignment:
| Q |
4185 |
aagaagctaaattagctcacttaaattgacactgaagagaatcgaa |
4230 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| ||||||| |
|
|
| T |
43124734 |
aagaagctaaattagcccactcaaattgacactgaagaaaatcgaa |
43124689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.000000002
Query Start/End: Original strand, 2226 - 2316
Target Start/End: Complemental strand, 4042754 - 4042664
Alignment:
| Q |
2226 |
agacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaa |
2316 |
Q |
| |
|
|||||||||||| ||||| | |||||||||| ||| ||||||||||| |||| ||| ||||||| | |||||| | ||||||||||||| |
|
|
| T |
4042754 |
agacaaattgattaactagagttgatgtattcggtttataatatagatcaaatgcatcaacttttattgactcatttatttcttataaaaa |
4042664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.00000003
Query Start/End: Original strand, 4241 - 4305
Target Start/End: Original strand, 3252307 - 3252371
Alignment:
| Q |
4241 |
tgaggaagagtacactcttaagtctcaagtcaatatcaacaggccaactcaagtggattaagaaa |
4305 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| || |||||||| ||||||| |||||||| |
|
|
| T |
3252307 |
tgaggaagagtgcactcccaagtctcaagtcaataccactaggccaacccaagtgggttaagaaa |
3252371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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