View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3283_high_2 (Length: 942)

Name: NF3283_high_2
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3283_high_2
NF3283_high_2
[»] chr3 (1 HSPs)
chr3 (1-926)||(45974273-45975197)


Alignment Details
Target: chr3 (Bit Score: 821; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 821; E-Value: 0
Query Start/End: Original strand, 1 - 926
Target Start/End: Original strand, 45974273 - 45975197
Alignment:
Q  1 gcgattatacttatcaatctgtcttctaagtttcttaagagtaaaatacaattcagcttccaactatatattatgcataataattagttcaagtgctgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45974273 gcgattatacttatcaatctgtcttctaagtttcttaagagtaaaatacaattcagcttccaactatatattatgcataataattagttgaagtgctgtt 45974372  T
Q  101 atttgattgttgcaataagagatttgcatgcgttgagnnnnnnnnnnnnnnnnnnncagcgaagaggacggtgtcggtaacggccaagtttccgtttgtt 200  Q
    |||||||||||||||||||||||||||||||||||||                   || |||||||||||||||||||||||||||||||||||||||||    
T  45974373 atttgattgttgcaataagagatttgcatgcgttgaggaaagaagaagaagaacagcaacgaagaggacggtgtcggtaacggccaagtttccgtttgtt 45974472  T
Q  201 tcttggtttgctacgtggcagcaagaggctcgtgagtgaaaatgccacatagagcaacttactttttcccgcgtcaatttccggagcgaggattggatga 300  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45974473 tcttggtttgctacgtggc-gcaagaggctcgtgagtgaaaatgccacatagagcaacttactttttcccgcgtcaatttccggagcgaggattggatga 45974571  T
Q  301 atcatccaaaaagctattagatcaagataaggacaaaatcgtcaactccatcaaatctccaatcgaaaacgacactccaaccacaaagtcactttcctcg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45974572 atcatccaaaaagctattagatcaagataaggacaaaatcgtcaactccatcaaatctccaatcgaaaacgacactccaaccacaaagtcactttcctcg 45974671  T
Q  401 tctactcctccaacaccaaaaaacgacgccgttttctcctccggcaaacatttcgtcgccggtgataaactccgattcagacaaaagcaaatatctgctt 500  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45974672 tctactcctccaacaccaaaaaacgatgccgttttctcctccggcaaacattccgtcgccggtgataaactccgattcagacaaaagcaaatatctgctt 45974771  T
Q  501 tctgcgactggtttatcgacaaaaaacgacactccggtcatcatactcaccacttccaccgccgcttgtcaacctccgatgacgatcacgactattttca 600  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45974772 tctgcgactggtttatcgacaaaaaacgacactccggtcatcttactcaccacttccaccgccgcttgtcaacctccgatgacgatcacgacttttttca 45974871  T
Q  601 ttctcagccagagacagccgtcaatgataccgcaatcgaccggaatttcgaccgtcaagtttcacttccgaggctatccagcgacagtagctatgcaggg 700  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45974872 ttctcagccagagacagccgtcaatgacaccgcaattgaccggaatttcgaccgtcaagtttcacttccgaggctatcgagcgacagtagctatgcaggg 45974971  T
Q  701 agtttgttttccagtgacattaaagaggaaacgcagtcgtctcaagtttccaccattccagcaaccactgcgaggaggcagaaggaagatgaagaaaaca 800  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45974972 agtttgttttccagtgacattaaagaggaaacgcagtcgtctcaagtttccaccattccagcaaccactgcgaggaggcagaaggaagatgatgaaaaca 45975071  T
Q  801 aagacgggttggtgaagaagtgtgaagaaagctatatcctgcagcttacgttagcgaagaggcttgcttctttggcaagtcttgtgtcggagcctgttct 900  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45975072 aagacgggttggtgaagaagtgtgaagaaagctatatcctgcagcttacgttagcgaagaggcttgcttctttggcaagtcttgtgtcggagcctgttct 45975171  T
Q  901 cactcctggcactgaaaattgggatg 926  Q
    ||||||||||||||||||||||||||    
T  45975172 cactcctggcactgaaaattgggatg 45975197  T

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