View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3283_high_20 (Length: 287)
Name: NF3283_high_20
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_high_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 73 - 270
Target Start/End: Complemental strand, 37523178 - 37522981
Alignment:
| Q |
73 |
agctaattaaattccattcactatcctgcaaagtctttcaccacaccacgaatcgaaaaaaccaaacataataataccatcatattcgataccaacaatc |
172 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37523178 |
agctaattaaattccattcagtatcctgcaaagtctttcaccacaccacgaatcgaaaaaaccaaacataataataccatcatattcgataccaacaatc |
37523079 |
T |
|
| Q |
173 |
acaaagaccatgacaatgttttaacccgtctgtctataagaagagatggtaatgacccaagccaaacccaataatagaaaaacgacaaaaataattat |
270 |
Q |
| |
|
||||||||||||| | || |||||||| ||| ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
37523078 |
acaaagaccatgagagtgatttaacccctctctctatcagaagagatggtaatgacccaagccaagcccaataatggaaaaacgacaaagataattat |
37522981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 37523344 - 37523287
Alignment:
| Q |
16 |
atcaacatataattagatcactttttataaatattatgaattaagaaaagaaattaca |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37523344 |
atcaacatataattagatcactttttataaatatcatgaattaagaaaagaaattaca |
37523287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 587128 - 587233
Alignment:
| Q |
81 |
aaattccattcactatcctgcaaagtctttcaccacaccacgaatcgaaaaaaccaaacataataataccatcatattcgataccaacaatcacaaagac |
180 |
Q |
| |
|
||||| ||| ||||||||| || ||||||| |||| ||| || | |||||||||||||||| |||| |||||||||| | ||||||| ||||| || |
|
|
| T |
587128 |
aaatttcatccactatcctataagatctttcatcacaacacaaaccaaaaaaaccaaacataaaaataacatcatattc---aacaacaattacaaaaac |
587224 |
T |
|
| Q |
181 |
catgacaat |
189 |
Q |
| |
|
||||||||| |
|
|
| T |
587225 |
catgacaat |
587233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University