View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3283_high_22 (Length: 265)
Name: NF3283_high_22
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 29240473 - 29240231
Alignment:
| Q |
1 |
gattgttagagaatagagaatataaagatatgtaccactcctcatccttatgagcattgaaataagctcttttttgtgtagaaatatactctgatttgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240473 |
gattgttagagaatagagaatataaagatatgtatcactcctcatccttatgagcattgaaataagctcttttttgtgtagaaatatactctgatttgta |
29240374 |
T |
|
| Q |
101 |
ttgttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcgaactctcagacataatgcgaaagattatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
29240373 |
ttgttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcgaactctcagacatagtgcaaaagattatt |
29240274 |
T |
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| Q |
201 |
ttccacaacttacctatattctgcttcagttggtagcatatca |
243 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29240273 |
ttccacaacttacctatgttctgcttcagttggtagcatatca |
29240231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 16827995 - 16827767
Alignment:
| Q |
15 |
agagaatataaagatatgtaccactcctcatccttatgagcattgaaataagctcttttttgtgtagaaatatactctgatttgtgttgttgatacctag |
114 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
16827995 |
agagaatataaagatacgtaccactcctcatccttatgagcactgaaataagctcttttttgtgtagaaatatactctgatttgtattcttgatacctag |
16827896 |
T |
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| Q |
115 |
aaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcgaactctcagacataatgcgaaagattattttccacaacttacc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16827895 |
aaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcaaactctcagacataatgcaaaagattattttccacaacttacc |
16827796 |
T |
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| Q |
215 |
tatattctgcttcagttggtagcatatca |
243 |
Q |
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| T |
16827795 |
tacgttctgcttcagttggtagtatatca |
16827767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 846564 - 846651
Alignment:
| Q |
33 |
taccactcctcatccttatgagcattgaaataagctcttttttgtgtagaaatatactctgatttgtgttgttgatacctagaaaaat |
120 |
Q |
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|||||||| ||||||| || | |||||||||||||| |||||| |||| |||||||||||| |||| | ||| || |||||||||| |
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| T |
846564 |
taccactcagcatccttgtgggtattgaaataagctcgtttttgggtagtaatatactctgacttgtactcttggtatctagaaaaat |
846651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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