View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3283_high_25 (Length: 252)
Name: NF3283_high_25
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_high_25 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 4781611 - 4781846
Alignment:
| Q |
1 |
aatggcacatcctatcgcaatggaggatatgcgttcatgtgctatcttcaacacactgtccacacggtagcttgacaaagcaatcaagttaaaagtcatg |
100 |
Q |
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| T |
4781611 |
aatggcacatcctatggcaatggaggatatgcgttcatgtgctatcttcaacacactgtccacacggtagcttgacaaagcaatcaagttaaaagtcatg |
4781710 |
T |
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| Q |
101 |
agaaatataactagaccatagtcatagttcttctttatataaggaatgaacctcatataagtagctaaagctcctgcaataacaaatccgcagaaaatcg |
200 |
Q |
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| T |
4781711 |
agaaatataactagaccatagtcatagttcttctttatataaggaatgaacctcatataagtagctaaagctcctgcaataacaaatccgcagaaaatcg |
4781810 |
T |
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| Q |
201 |
catattaagaataatcgttaatcatcacaaacttat |
236 |
Q |
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| T |
4781811 |
catattaagaataatcgttaatcatcacaaacttat |
4781846 |
T |
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Target: scaffold0710 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 5193 - 5101
Alignment:
| Q |
83 |
atcaagttaaaagtcatgagaaatataactagaccatagtcatagttcttctttatataaggaatgaacctcatataagtagctaaagctcct |
175 |
Q |
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| T |
5193 |
atcaaattaaaggtcaagagaaatatcataacaccatagtcataattcttctttatataaggaatgaaccttacataagtagcagaagctcct |
5101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 51861234 - 51861142
Alignment:
| Q |
83 |
atcaagttaaaagtcatgagaaatataactagaccatagtcatagttcttctttatataaggaatgaacctcatataagtagctaaagctcct |
175 |
Q |
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| T |
51861234 |
atcaaattaaaggtcaagagaaatatcataacaccatagtcataattcttctttatataaggaatgaaccttacataagtagcagaagctcct |
51861142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 40634210 - 40634152
Alignment:
| Q |
104 |
aatataactagaccatagtcatagttcttctttatataaggaatgaacctcatataagt |
162 |
Q |
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| T |
40634210 |
aatataaccacaccataatcataattcttctttatataaggaatgaacctcatataagt |
40634152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 40645806 - 40645762
Alignment:
| Q |
115 |
accatagtcatagttcttctttatataaggaatgaacctcatata |
159 |
Q |
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| T |
40645806 |
accataatcataactcttctttatatagggaatgaacctcatata |
40645762 |
T |
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