View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3283_high_27 (Length: 251)
Name: NF3283_high_27
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 17435504 - 17435744
Alignment:
| Q |
1 |
ctgtatatattatgcattgttctactaacagagtt-----cacggagtgtttgtaattttcgttttatgtatataatttattaacagtgttactcgtact |
95 |
Q |
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| T |
17435504 |
ctgtatatattatgcattgttctactaacagagtttagctcacggagtgtttgtaattttcgttgtatgtatataatttattaacagtgttactcgtact |
17435603 |
T |
|
| Q |
96 |
cacannnnnnnctataagctacccgtatacttcacatgataaacgtacgacacatatttcaaaattaaattgttataacattatgtgaaagaaaagtctt |
195 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17435604 |
cacatttttttctataagctacccgtatacttcacatgataaacgtacgacacatatttcaaaattaaattgttataacattatgtgaaagaaaagtctt |
17435703 |
T |
|
| Q |
196 |
taacatttacgaaatcattgaactcttcctctttaagcaca |
236 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17435704 |
taacatttacgaaatcattgaacccttcctctttaagcaca |
17435744 |
T |
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