View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3283_high_3 (Length: 770)

Name: NF3283_high_3
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3283_high_3
NF3283_high_3
[»] chr1 (1 HSPs)
chr1 (1-753)||(1591728-1592481)


Alignment Details
Target: chr1 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 1 - 753
Target Start/End: Original strand, 1591728 - 1592481
Alignment:
Q  1 ttgaatataatgttaacagtatatatannnnnnncctcgaaagaaaccgtatataatgtcatatattgtttttatggactataagatgactcctaatctt 100  Q
    ||||||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1591728 ttgaatataatgttaaccgtatatat--ttttttcctcgaaagaaaccgtatataatgtcatatattgtttttatggaccataagatgactcctaatctt 1591825  T
Q  101 ttagtggatctgaaattaagatcaaacatatatttattagaaataatagtggtttcaagggtccatatccatctctagactaggaggccataatatctaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1591826 ttagtggatctgaaattaagatcaaacatatatttattagaaataatagtggtttcaagggtccatatccatctctagactaggaggccataatatctaa 1591925  T
Q  201 tgtcaaacatttacatgtttcattttttgtctcacaccgtaaatcattttaaaggtggaaaagcgataaaatgcatcaagaacaaagattatataaacaa 300  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  1591926 tgtcaaacatttacatgtttcatttttt--ctcacaccgtaaatcattttaaaggtggaaaagcgataaaatacatcaagaacaaagatcagataaacaa 1592023  T
Q  301 cacaataaaatctattcaaatagtccttnnnnnnnnnnnn-ctattcaaatagaaattatc-----ataatacaaagggtttcccttgacattcctcata 394  Q
    ||||||||||||||||||||||||||||             ||||||||||||||||||||     |||||||||||||||||||||||||||||| |||    
T  1592024 cacaataaaatctattcaaatagtccttaaaaaaaaaaaaactattcaaatagaaattatcatatcataatacaaagggtttcccttgacattccttata 1592123  T
Q  395 aatatgcccttccccaccatagacaagtgttacatcattagtagcagtcggtatgatgatatttaatcataccatatatttcagtaaaatctataattta 494  Q
    |||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  1592124 aatatgccctcccccaccgtagacaagtgttacatcattagtagtagtcggtatgatgacatttaatcatagcatatatttcagtaaaatctataattta 1592223  T
Q  495 taggaaaacaattttacttactactttattacttgtaagatttggtacatttgtcgaattatccatgaatgtatcgacgatgttggcttaggtgcttcaa 594  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1592224 taggaaaacaattttacttactattttattacttgtaagatttggtacacttgtcgaattatccatgaatgtatcgaagatgttggcttaggtgcttcaa 1592323  T
Q  595 ctttaggtacagtcacagatgttaaaatcttcaacatgagttaatcagagtactaagcagccaaagttgattcttctttcatttcataaattattgcttc 694  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1592324 ctttagggac-gtcacagatgttaaaatcttcaacatgagttaatcagagtactaagcagccaaagttgattcttctttcatttcataaattattgcttc 1592422  T
Q  695 ctttttagtcgcactcattctttcagttaaccactagtaactattaagtattaactact 753  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1592423 ctttttagtcgcactcattctttcagttaaccaccagtaactattaagtattaactact 1592481  T

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