View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3283_high_31 (Length: 238)
Name: NF3283_high_31
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_high_31 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 43832456 - 43832234
Alignment:
| Q |
16 |
gaaactattggtttgttcaaattttacttagttccagtggtatagcactgttataccagctatttaacagcacttattaatatcacatcttagaacaata |
115 |
Q |
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| T |
43832456 |
gaaactattggtttgttcaaattttacttagttccagtggtatagcactgttataccagctatttaacagcacttattaatatcacatcttagaacaata |
43832357 |
T |
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| Q |
116 |
gcaatttgttcaaattcttctactctataccagctatttgacaataaaacaaattcacatgaaatacaaacattgaatcaagtaaccaacaaaaacccaa |
215 |
Q |
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| T |
43832356 |
gcaatttgttcaaattcttctactctataccagctatttgacaataaaacaaattcacatgaaatacaaacattgaatcaagtaaccaacaaaaacccaa |
43832257 |
T |
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| Q |
216 |
ggaataattaatataacataaac |
238 |
Q |
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| T |
43832256 |
ggaataattaatataacataaac |
43832234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 4449682 - 4449719
Alignment:
| Q |
107 |
agaacaatagcaatttgttcaaattcttctactctata |
144 |
Q |
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| T |
4449682 |
agaacaataacaatttgttcaaattctgctactctata |
4449719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 30477961 - 30477907
Alignment:
| Q |
107 |
agaacaatagcaatttgttcaaattcttctactctataccagctatttgacaata |
161 |
Q |
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| T |
30477961 |
agaacaatagtaatttattcaaattcttctacactatagccactatttgacaata |
30477907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 131
Target Start/End: Complemental strand, 35536497 - 35536468
Alignment:
| Q |
102 |
atcttagaacaatagcaatttgttcaaatt |
131 |
Q |
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| T |
35536497 |
atcttagaacaatagcaatttgttcaaatt |
35536468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 137
Target Start/End: Original strand, 27330130 - 27330158
Alignment:
| Q |
109 |
aacaatagcaatttgttcaaattcttcta |
137 |
Q |
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| T |
27330130 |
aacaatagcaatttgttcaaattcttcta |
27330158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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