View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3283_high_34 (Length: 230)
Name: NF3283_high_34
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 47423888 - 47424111
Alignment:
| Q |
1 |
tcttcttggtttaaagagaacatagtaatggttgtaacannnnnnn-caaggagtttggtctctcattttcttcttggtttaaagggaacaggtagatgg |
99 |
Q |
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| T |
47423888 |
tcttcttggtttaaagagaacagagtaatggttgaaacattttttttcaaggagtttggtctctcattttcttcttggtttaaagggaacaggtagatgg |
47423987 |
T |
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| Q |
100 |
ttgaagcgtttctttt----aggaatttggtctttaaaagaacacgaacaatgaatttatgtcttctcgatttattttgaaatcactgattggggttccg |
195 |
Q |
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| T |
47423988 |
ttgaagcgttttttttttttaggaatttggtctttaaaagaagacgaacaatgaatttatgtcttctcggtttattttgaaatcattgattggggttccg |
47424087 |
T |
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| Q |
196 |
ttgaggaacttctggactttctct |
219 |
Q |
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||||||||| |||||||||||||| |
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| T |
47424088 |
ttgaggaacctctggactttctct |
47424111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 19399861 - 19399767
Alignment:
| Q |
124 |
ggtctttaaaagaacacgaacaatgaatttatgtcttctcgatttattttgaaatcactgattggggttccgttgaggaacttctggactttctc |
218 |
Q |
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| T |
19399861 |
ggtctctaaaagaagacgaacaatgaatttatgttttctcaatttattctgaaatcaccgattcaggttctgttgaggaacctctagaatttctc |
19399767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 8583975 - 8584079
Alignment:
| Q |
116 |
aggaatttggtctttaaaagaacacgaacaatgaatttatgtcttctcgatttattttgaaatcactgattggggttccgttgaggaacttctggacttt |
215 |
Q |
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| T |
8583975 |
aggaatttgctctaaaaaagaagaggaacagtagatttatgtcttctcagtttattctggaatcagttattggggctctgttgaagaacctctggatttt |
8584074 |
T |
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| Q |
216 |
ctctg |
220 |
Q |
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||||| |
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| T |
8584075 |
ctctg |
8584079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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