View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3283_high_35 (Length: 228)
Name: NF3283_high_35
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 26144512 - 26144319
Alignment:
| Q |
13 |
cacagaggagcaactaaagttaatgcgtggattgattccatgagagcctcatctcctactcgaaccagacacgattcagaaaatcgtgaccagactcatt |
112 |
Q |
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| T |
26144512 |
cacaaaggagcaactaaagttaacgcgtggattgattccatgagagcttcatctcctactcgaaccagacacgattcagaaaatcgtgaccagactcatt |
26144413 |
T |
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| Q |
113 |
ggactgtaagccttattacttatacacacatacacacaaaataaaagtttgtttgactatgattctaaagtgtgttggtcgcatttgtctgtattaca |
210 |
Q |
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| T |
26144412 |
ggactgtaagccttattactt----acacacacacacaaaataaaagtttgtttgactatgattctaaagtgtgtcggtcgcatttgtctgtattaca |
26144319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 37784537 - 37784655
Alignment:
| Q |
13 |
cacagaggagcaactaaagttaatgcgtggattgattccatgagagcctcatctcctactcgaaccagacacgattcagaaaatcgtgaccagactcatt |
112 |
Q |
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|||| ||||||||||||||||||||||| ||| |||||||||||||| | ||||||| | ||||||||||||| ||||||||||||||||| ||||||| |
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| T |
37784537 |
cacaaaggagcaactaaagttaatgcgttgatcgattccatgagagctttgtctcctagtagaaccagacacgaatcagaaaatcgtgaccaaactcatt |
37784636 |
T |
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| Q |
113 |
ggactgtaagccttattac |
131 |
Q |
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|||||||||||||| |||| |
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| T |
37784637 |
ggactgtaagccttgttac |
37784655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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