View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3283_high_38 (Length: 216)
Name: NF3283_high_38
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_high_38 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 18617179 - 18616975
Alignment:
| Q |
1 |
aaaaccttctaaattttccttctatatatacacttttttccttctatattttcaaccacattactaccaattccatcatcttgtgtaatattcttcaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18617179 |
aaaaccttctaaattttccttctatatatacacttttttccttctatattttcaaccacattactaccaattccatcatcttgtgtaatattcttcaact |
18617080 |
T |
|
| Q |
101 |
ccttcataatatactaactagtaacttcatcataaccatgaataccttcaacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18617079 |
ccttcataatatactaactagtaacttcatcataaccatgaataccttcaacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctat |
18616980 |
T |
|
| Q |
201 |
gctac |
205 |
Q |
| |
|
|||| |
|
|
| T |
18616979 |
tctac |
18616975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 15099374 - 15099474
Alignment:
| Q |
105 |
cataatatactaactagtaacttcatcataaccatgaataccttcaacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctatgcta |
204 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15099374 |
cataatatactacctagtaacttcatcataaccatgaataccttcaacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctattcta |
15099473 |
T |
|
| Q |
205 |
c |
205 |
Q |
| |
|
| |
|
|
| T |
15099474 |
c |
15099474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 15110609 - 15110709
Alignment:
| Q |
105 |
cataatatactaactagtaacttcatcataaccatgaataccttcaacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctatgcta |
204 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15110609 |
cataatatactacctagtaacttcatcataaccatgaataccttcaacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctattcta |
15110708 |
T |
|
| Q |
205 |
c |
205 |
Q |
| |
|
| |
|
|
| T |
15110709 |
c |
15110709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 28862881 - 28862814
Alignment:
| Q |
127 |
tcatcataaccatgaataccttcaacaatcatcaacaagcccctatatcatatccaccaccaggtgag |
194 |
Q |
| |
|
||||||| | ||||| || |||||||||||| ||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
28862881 |
tcatcatcaacatgagtaacttcaacaatcagcaacaagccccagtatcatatccaccacaaggtgag |
28862814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University