View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3283_high_5 (Length: 480)
Name: NF3283_high_5
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 83 - 469
Target Start/End: Original strand, 45012484 - 45012868
Alignment:
| Q |
83 |
aggatattatttcaaattgcaacgtgcaaaaaatgcaggactaattcaacatacattcacgattttactcactaagttggagcaaaatattttggtagtt |
182 |
Q |
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| T |
45012484 |
aggatattatttcaaattgcaacgtgcaaaaaatgcaggactaattcaacatacattcacgattttactcactaagttggagcaaaatattttggtagtt |
45012583 |
T |
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| Q |
183 |
agagtagttttgaatcagtaataagagttggtatatcaaacaatccattgtatgttcataacattttctttgtgtagctgccaaattgtaacattgtcat |
282 |
Q |
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| T |
45012584 |
agagtagttttgaatcagtaataagagttggtatatcaaacaatccattgtatgttcgtaacattttctttgtgtagctgccaaattg--acattgtcat |
45012681 |
T |
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| Q |
283 |
ggtctaaaatttcccgttaggtaactactataaaaaccaacacacatgtttaacaaagtaatataattccttgtattacatcagacaaattaattaacat |
382 |
Q |
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| T |
45012682 |
ggtctaaaatttcccattaggtaactactataaaaaccaacacacatgtttaacaaaataatataattccttgtattacatcagacaaattaattaacat |
45012781 |
T |
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| Q |
383 |
gaagtttagtaaggtgatagttattatagtagccatcattttgggtattgggattgaagaatgccattgtaaggttgtgcaattcat |
469 |
Q |
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| T |
45012782 |
gaagtttagtaaggtgatagttattatagtagccatcattttgggtattgggattgaagaatgccattgtaaggttgttcaattcat |
45012868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 45012387 - 45012468
Alignment:
| Q |
19 |
tttgttgagaattaaattttgagggacaccccgtattcaatatttaattcgtgttccttgtactaggatattatttcaaatt |
100 |
Q |
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| T |
45012387 |
tttgttgagaattaaattttgagggtcaccccgtattcaatatttaattcgtgttccttgtactaggatattatttcaaatt |
45012468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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