View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3283_low_10 (Length: 403)
Name: NF3283_low_10
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 6 - 387
Target Start/End: Original strand, 34505431 - 34505812
Alignment:
| Q |
6 |
gtgagatgaagtccacatatggcactagtttttctaaattttctatatatatacacaccaactagaacatatatcaggttaatattcattctttcacagt |
105 |
Q |
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| T |
34505431 |
gtgatatgaagtccacatatggcactagtttttataaattttctatatatatacacaccaactagaacatatatcaggttaatattcattctttcacagt |
34505530 |
T |
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| Q |
106 |
ttttggaccaccagaataggaccatatggctttcaatgtccatacattgtttttgctctcactgtttagcatagctctacttgtatccatgcacccagca |
205 |
Q |
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| T |
34505531 |
ttttggaccaccagaataggaccatatggctttgaatgtccatacattgtttttgctctctctgtttagcatagctctacttgtatccatgcacccagca |
34505630 |
T |
|
| Q |
206 |
acagcacaaaagtcaaataattgtaatttgttctttggaagctgggtgattgactcttcatatcctctctatgattcttcaacctgtcctttcgttgaag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34505631 |
acagcacaaaagtcaaataattgtaatttgttctttggaagctgggtgattgactcttcatatcctctctatgattcttcaagctgtcctttcgttgaag |
34505730 |
T |
|
| Q |
306 |
ctcagtttgattgccaaaaatttggaagacctgataatcagtatcttaaatactcttggaagcctgattcatgtgctttacc |
387 |
Q |
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| T |
34505731 |
ctcagtttgattgccaacaatttggaagacctgataatcagtatcttaaatactcttggaagcctgattcatgtgatttacc |
34505812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 224 - 387
Target Start/End: Original strand, 34515483 - 34515646
Alignment:
| Q |
224 |
aattgtaatttgttctttggaagctgggtgattgactcttcatatcctctctatgattcttcaacctgtcctttcgttgaagctcagtttgattgccaaa |
323 |
Q |
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| T |
34515483 |
aattgtaatttgttctctggtagttgggtgattggctcttcatatactctctatgattcttcaagctgccccttcttagaagctcaatttgattgccaaa |
34515582 |
T |
|
| Q |
324 |
aatttggaagacctgataatcagtatcttaaatactcttggaagcctgattcatgtgctttacc |
387 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34515583 |
aatttggaagacttgataatcagtatcttaaatactcttggaagcctgattcttgtgctttacc |
34515646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 34515303 - 34515423
Alignment:
| Q |
78 |
atcaggttaatattcattctttcacagtttttggaccaccagaataggaccatatggctttcaatgtccatacattgtttttgctctcactgtttagcat |
177 |
Q |
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|||| |||||||||| ||| |||||||||||||||| || |||||||| |||||| |||||||||||||| ||||||||| ||||| | |||||| | |
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| T |
34515303 |
atcaagttaatattc--tctgtcacagtttttggaccctcaaaataggacaatatgggtttcaatgtccataaattgtttttcctctctttctttagcct |
34515400 |
T |
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| Q |
178 |
agctctacttgtatccatgcacc |
200 |
Q |
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|||||| |||||||||||||||| |
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| T |
34515401 |
agctctccttgtatccatgcacc |
34515423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 387
Target Start/End: Complemental strand, 4690773 - 4690619
Alignment:
| Q |
230 |
aatttgttctttggaagctgggtgattgactcttcatatcctctctatgattcttcaacctgtcctttcgttgaagctcagtttgattgccaaaaatttg |
329 |
Q |
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||||||||| | ||||| |||||| ||||| |||| ||||||||||||||||| || ||| || ||| |||| || | ||| |||| ||||| | || |
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| T |
4690773 |
aatttgttcataggaagttgggtggttgacccttcttatcctctctatgattc---aagctgccccttcattgatcctgaatttaattgtcaaaagtatg |
4690677 |
T |
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| Q |
330 |
gaagacctgataatcagtatcttaaatactcttggaagcctgattcatgtgctttacc |
387 |
Q |
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||||||||||||| || || || |||||||||||||| |||||||||||||| ||||| |
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| T |
4690676 |
gaagacctgataaacaatacctcaaatactcttggaaacctgattcatgtgccttacc |
4690619 |
T |
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