View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3283_low_12 (Length: 339)
Name: NF3283_low_12
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 29240537 - 29240860
Alignment:
| Q |
1 |
cacaatctgatgttgaattttgtttctcgttttactttttatataggttgaaagataaatatcatccaacaaatttgcttacagtcattgaaaggtaatt |
100 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240537 |
cacaatctgatgttgaattccgtttctcgttttgctttttatataggttgaaagataaatatcatccaacaaatttgcttacagtcattgaaaggtaatt |
29240636 |
T |
|
| Q |
101 |
attacnnnnnnnatttcaattttagagttctattgaaaagcataacgtattgtcctgctaatcttaatagatcatttttatttttgtgaggggttcttac |
200 |
Q |
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| T |
29240637 |
attactttttttatttcaattttagagttctattgaaaagcataacgtattgtcctgctaatcttaatagatcatttttatttttgtgaggggttcttac |
29240736 |
T |
|
| Q |
201 |
tagatagatagataggtggattctaatttttatttcttcatatcttttaggcgaatgaaagtgctcgacaactagtaaaggattttttgcttgatttgca |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
29240737 |
taga----tagataggtggattctaatttttatttcttcatatcttttaggcgaatgaaagtgctcgacagctggtaaaggattttttgcttgatttgca |
29240832 |
T |
|
| Q |
301 |
aagtggaacattagatctgtaagttctt |
328 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
29240833 |
aagtggaacattagatctgtaagttctt |
29240860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 16828073 - 16828403
Alignment:
| Q |
1 |
cacaatctgatgttgaattttgtttctcgttttactttttatataggttgaaagataaatatcatccaacaaatttgcttacagtcattgaaaggtaatt |
100 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16828073 |
cacaatctgatgttgatttccctttctcgttttactttttatataggttgaaagataaatatcatccaacaaatttgcttacagtcattgaaaggtaatt |
16828172 |
T |
|
| Q |
101 |
------attacnnnnnnnatttcaattttagagttctattgaaaagcataacgtattgtcctgctaatcttaatagatcatttttatttttgtgaggggt |
194 |
Q |
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|||| || ||||||||| |||||||||||||| |||||||| |||||||| |||||||||| |||||||||||||||| || ||||| |
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| T |
16828173 |
cttattattattttttttatatcaattttacagttctattgaaaaacataacgtgttgtcctgttaatcttaatggatcatttttatttttatggggggt |
16828272 |
T |
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| Q |
195 |
tcttactagatagatagataggtggattctaatttttatttcttcatatcttttaggcg-aatgaaagtgctcgacaactagtaaaggattttttgcttg |
293 |
Q |
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|||||| |||| |||| |||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| || | ||||||||||||||||| |
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| T |
16828273 |
gcttactcgataaatag----gtggattctaatttttatttcttcatatattttaggaggaatgaaagtgctcgacagctggcaaaggattttttgcttg |
16828368 |
T |
|
| Q |
294 |
atttgcaaagtggaacattagatctgtaagttctt |
328 |
Q |
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| T |
16828369 |
atttgcaaagtggaacattagatccgtaagttctt |
16828403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 846427 - 846375
Alignment:
| Q |
44 |
taggttgaaagataaatatcatccaacaaatttgcttacagtcattgaaaggt |
96 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||| |||||||||| |
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| T |
846427 |
taggttgaaagataagtatcatccaacaaatttacttacagtaattgaaaggt |
846375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 846199 - 846161
Alignment:
| Q |
277 |
aaaggattttttgcttgatttgcaaagtggaacattaga |
315 |
Q |
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|||||| ||||||||||||||||||||||||||| |||| |
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| T |
846199 |
aaaggagtttttgcttgatttgcaaagtggaacactaga |
846161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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