View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3283_low_13 (Length: 329)
Name: NF3283_low_13
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_low_13 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 175 - 329
Target Start/End: Original strand, 8076581 - 8076740
Alignment:
| Q |
175 |
cctcacatataacccatgcataacacactacaa-----ggcatatcaaaatcatcatattagcatagcaaacaactccaactactataatatatcttcct |
269 |
Q |
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| T |
8076581 |
cctcacatataacccatgcataacacactacaatagaaggcatatcaaaatcatcatattagtatagcaaacaattccaactactataatatatcttcct |
8076680 |
T |
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| Q |
270 |
aaaaaatttctcatcatcttgattaaaccatggcttgcatttctttgtcaacaatcattt |
329 |
Q |
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| T |
8076681 |
gaaatttttctcatcatcttggttaaaccatggcttgcatttctttgtcaacaatcattt |
8076740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 8076244 - 8076392
Alignment:
| Q |
15 |
agattatagattttgcactctcctacagttctgctagttacgcaactgactttgagattgctttctgtttgagaacataggcttttaatgcatatatagg |
114 |
Q |
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| T |
8076244 |
agattatagattttgcactctcctacagttctgctagttacgccactgactttgagattg---------------cataggctttcaatgcatatatagg |
8076328 |
T |
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| Q |
115 |
atggttaaccnnnnnnntaattgtaattcaattttagttacacaatttcatctataaaagcctc |
178 |
Q |
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| T |
8076329 |
atggttaaccaaaaaaataattgtaattaaattttagttacacaatttcatctattaaaccctc |
8076392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 8096055 - 8095984
Alignment:
| Q |
153 |
tacacaatttcatctataaaagcctcacatataacccatgca-taacacactacaaggcatatcaaaatcat |
223 |
Q |
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| T |
8096055 |
tacaaaatttcatctataaaaggcacacatataacacaagaagtaacatactacaaagcatatcaaaatcat |
8095984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 8112223 - 8112160
Alignment:
| Q |
158 |
aatttcatctataaaagcctcacatataacccatgca-taacacactacaaggcatatcaaaat |
220 |
Q |
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| T |
8112223 |
aatttcatctataaaagccacacatataacacaagaagtaacatactacaaagcatatcaaaat |
8112160 |
T |
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