View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3283_low_14 (Length: 326)

Name: NF3283_low_14
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3283_low_14
NF3283_low_14
[»] chr1 (5 HSPs)
chr1 (102-187)||(47423649-47423734)
chr1 (7-66)||(47423794-47423853)
chr1 (102-152)||(19400070-19400120)
chr1 (102-152)||(50103079-50103129)
chr1 (281-310)||(47423555-47423584)


Alignment Details
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 47423734 - 47423649
Alignment:
Q  102 atcgatctgaaattttgtgcttgtaacatggggtgaaacaaaatcaataaatnnnnnnntaacaaagaaataatcgacctcaatac 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||        ||||||||||||||||| ||||||||    
T  47423734 atcgatctgaaattttgtgcttgtaacatggggtgaaacaaaatcaaaaaataaaaaagcaacaaagaaataatcgatctcaatac 47423649  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 47423853 - 47423794
Alignment:
Q  7 tcgaagaatatataacataaaaaggtccgcaaatctatggtattttatgttctattcttt 66  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47423853 tcgaacaaaatataacataaaaaggtccgcaaatctatggtattttatgttctattcttt 47423794  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 19400070 - 19400120
Alignment:
Q  102 atcgatctgaaattttgtgcttgtaacatggggtgaaacaaaatcaataaa 152  Q
    ||||||||||||||||||  |||| ||||||| ||||||||||||||||||    
T  19400070 atcgatctgaaattttgtagttgtgacatgggatgaaacaaaatcaataaa 19400120  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 50103079 - 50103129
Alignment:
Q  102 atcgatctgaaattttgtgcttgtaacatggggtgaaacaaaatcaataaa 152  Q
    ||||||||||||||| || | ||| | ||||||||||||||||||||||||    
T  50103079 atcgatctgaaatttcgtacatgtgatatggggtgaaacaaaatcaataaa 50103129  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 310
Target Start/End: Complemental strand, 47423584 - 47423555
Alignment:
Q  281 attaaattaacaatgttacaaagacttaat 310  Q
    ||||||||||||||||||||||||||||||    
T  47423584 attaaattaacaatgttacaaagacttaat 47423555  T

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