View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3283_low_15 (Length: 320)
Name: NF3283_low_15
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_low_15 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 550151 - 549841
Alignment:
| Q |
10 |
aatatgactaataattgtatgtaatttctgagtttgggtttctcatctacctcctatttataacaagtggaccttggtatatgataaatgttgcaaaccg |
109 |
Q |
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| T |
550151 |
aatatgactaataattgtatgtaatttctgagtttgggtttctcatctacctcctatttataacaagtggaccttggtatatgataaatgttgcaaaccg |
550052 |
T |
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| Q |
110 |
aaaatcgtaatttccattctctctactagtcagaaattcacgtgcatggctaccttctcgtcaattatgttcatagtaattgaacttacttttctggctg |
209 |
Q |
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| T |
550051 |
aaaatcgtaatttccattctctctactagtcagaaattcacgtgcatggctaccttctcgtcaattatgttcatagtaattgaacttactttgctggctg |
549952 |
T |
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| Q |
210 |
gtatgtatacttaggtggattgtacatttattaatgcatctccacaaaaaccttgagcttcctaaattgaattaaattcatcactatggagcaaaaaaca |
309 |
Q |
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| T |
549951 |
gtgtgtatacttaggtggattgtacatttattaatgcatctccacaaaaacctagagcttcctaaattgaattaaattcatcactatggagcaaaaaaca |
549852 |
T |
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| Q |
310 |
tgcatagccat |
320 |
Q |
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| T |
549851 |
tgcatagccat |
549841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 38 - 177
Target Start/End: Original strand, 23422523 - 23422666
Alignment:
| Q |
38 |
tgagtttgggtttctcatctacctc---ctatttataacaagtggaccttggtatatgataaatgttgcaaaccgaaaatcgtaatttccattctctcta |
134 |
Q |
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| T |
23422523 |
tgagtttggtttgctcatctacctcctcctatttataacaagtggaccttggtatatgataattgttgcaaaccgaaaatcgtaatttccattctctcta |
23422622 |
T |
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| Q |
135 |
ctagtcagaaattcacgtgcat-ggctaccttctcgtcaattat |
177 |
Q |
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| T |
23422623 |
ctagtcagaaattcacgagcataggctaccttgtcgtcaattat |
23422666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 214 - 320
Target Start/End: Original strand, 23422677 - 23422787
Alignment:
| Q |
214 |
gtatacttaggtggattgtacattt-attaatgcatctccacaaaaaccttgagcttcctaaattgaattaaattcatcactat---ggagcaaaaaaca |
309 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23422677 |
gtataattaggtggattgtacattttattaatgcatctccacaaaaaccttgagcttcctaaattgaattaaattcatcactatggaggagcaaaaaaca |
23422776 |
T |
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| Q |
310 |
tgcatagccat |
320 |
Q |
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| T |
23422777 |
tgcatagccat |
23422787 |
T |
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