View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3283_low_16 (Length: 307)
Name: NF3283_low_16
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 28146362 - 28146090
Alignment:
| Q |
18 |
tccattcttatcaacccctttgatcatacgctcgcattctccaatactacaatgatcaaatcctaaatttatcagaactctcttaagttccttagctgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28146362 |
tccattcttatcaacccctttgatcatacgcttgcattctccaatactacaatgatcaaatcctaaatttatcagaactctcttaagttccttagctgaa |
28146263 |
T |
|
| Q |
118 |
attaaaccattcttatcagtgtcaaagacatgaaaagcatccatgagatactcatcttgttccttgtcattggcacaaccaaacttgccttctttgtcat |
217 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28146262 |
attagaccattcttatcagtgtcaaagacatgaaaagcatccatgagatactcatcttgctccttgtcattggcacaaccaaacttgccttctttgtcat |
28146163 |
T |
|
| Q |
218 |
ccataacaaccatgaattcctccaaatctacaaacccatctccatttgagtccaaaacatttaccataccttc |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28146162 |
ccataacaaccatgaattcctccaaatctacaaacccatctccatttgagtccaaaacatttaccataccttc |
28146090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 13246061 - 13246204
Alignment:
| Q |
18 |
tccattcttatcaacccctttgatcatacgctcgcattctccaatactacaatgatcaaatcctaaatttatcagaactctcttaagttccttagctgaa |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || || | | |||||||| ||| | || | ||| | || ||||||| | | |||||||| ||| |
|
|
| T |
13246061 |
tccattcttatcaacccctttaatcatacgcttacaatcccttaaactacaattttcacaaccaagattaaccaaaactctcctcaattccttaggtgag |
13246160 |
T |
|
| Q |
118 |
attaaaccattcttatcagtgtcaaagacatgaaaagcatccat |
161 |
Q |
| |
|
||||| |||||||||||| | ||||| ||| ||||||||||||| |
|
|
| T |
13246161 |
attaatccattcttatcaatatcaaacacaagaaaagcatccat |
13246204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University