View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3283_low_17 (Length: 306)
Name: NF3283_low_17
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 109 - 255
Target Start/End: Complemental strand, 12285206 - 12285060
Alignment:
| Q |
109 |
aaccaaacataagaaccgatagggataagatcaatcaaacagaagaacaatcaaatataagaaccaagaggtggaaaatcaatcaaatagatgatccaac |
208 |
Q |
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| T |
12285206 |
aaccaaacataagaaccgatagggataagatcaatcaaacagaagaacaatcaaatataagaaccaagagatggaaaatcaatcaaatagatgatccaac |
12285107 |
T |
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| Q |
209 |
agagagaaagaagcaatcaatagggagaaaaccagtcaaacataacc |
255 |
Q |
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| T |
12285106 |
agagagaaagaagcaatcaatagggagaaaaccagtcaaacgtaacc |
12285060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 12285349 - 12285270
Alignment:
| Q |
10 |
aggagcacagaccaatcaattccaatccaaaggaaatagaaaaaccggtagggagaagcaaccaaaacataagaacaaat |
89 |
Q |
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| T |
12285349 |
aggatcacaaaccaatcaattccaatccaaagcaaatagaaaaaccggtagggagaagcaaccaaaacataataacaaat |
12285270 |
T |
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