View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3283_low_23 (Length: 274)

Name: NF3283_low_23
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3283_low_23
NF3283_low_23
[»] chr3 (21 HSPs)
chr3 (1-249)||(46759107-46759354)
chr3 (36-105)||(38462194-38462263)
chr3 (34-95)||(41028937-41028998)
chr3 (36-94)||(27792796-27792854)
chr3 (36-96)||(33307668-33307728)
chr3 (36-80)||(40122840-40122884)
chr3 (36-87)||(20192694-20192745)
chr3 (40-99)||(39971238-39971297)
chr3 (36-95)||(44374732-44374791)
chr3 (35-93)||(905057-905115)
chr3 (36-94)||(16790444-16790502)
chr3 (36-86)||(33434095-33434144)
chr3 (35-101)||(41159026-41159092)
chr3 (36-94)||(53457301-53457359)
chr3 (36-85)||(1395604-1395653)
chr3 (36-81)||(8007783-8007828)
chr3 (41-94)||(16790181-16790234)
chr3 (69-105)||(28289242-28289278)
chr3 (69-105)||(29094294-29094330)
chr3 (36-100)||(32064358-32064422)
chr3 (35-127)||(39342924-39343016)
[»] chr7 (16 HSPs)
chr7 (45-128)||(22388001-22388084)
chr7 (38-95)||(5373148-5373205)
chr7 (36-104)||(31341108-31341176)
chr7 (48-100)||(39359951-39360003)
chr7 (44-103)||(3610836-3610895)
chr7 (40-94)||(991994-992048)
chr7 (36-94)||(5276148-5276206)
chr7 (36-94)||(7244626-7244684)
chr7 (36-86)||(28165023-28165073)
chr7 (42-92)||(33894549-33894599)
chr7 (36-94)||(47004011-47004069)
chr7 (69-102)||(21073098-21073131)
chr7 (70-107)||(23721412-23721449)
chr7 (36-105)||(28440432-28440501)
chr7 (36-92)||(24973870-24973926)
chr7 (39-95)||(44241783-44241839)
[»] chr5 (19 HSPs)
chr5 (36-105)||(6738495-6738564)
chr5 (41-128)||(26516188-26516275)
chr5 (36-141)||(39257474-39257578)
chr5 (42-105)||(10391266-10391329)
chr5 (36-95)||(20982223-20982282)
chr5 (39-86)||(40048371-40048418)
chr5 (36-85)||(7096215-7096264)
chr5 (39-120)||(27106014-27106095)
chr5 (37-105)||(29115302-29115370)
chr5 (41-128)||(13224320-13224406)
chr5 (42-105)||(29588793-29588856)
chr5 (36-103)||(32059677-32059743)
chr5 (37-92)||(34690800-34690855)
chr5 (36-95)||(35135750-35135809)
chr5 (36-127)||(39128530-39128621)
chr5 (36-94)||(17756817-17756875)
chr5 (36-105)||(37063162-37063231)
chr5 (69-105)||(27104535-27104571)
chr5 (36-128)||(32172543-32172635)
[»] chr8 (17 HSPs)
chr8 (41-128)||(12972746-12972833)
chr8 (36-128)||(34563140-34563232)
chr8 (36-95)||(14482125-14482184)
chr8 (40-94)||(35298570-35298624)
chr8 (39-128)||(4558688-4558777)
chr8 (41-86)||(11188248-11188293)
chr8 (36-105)||(29699167-29699236)
chr8 (38-105)||(5226515-5226582)
chr8 (36-94)||(787194-787252)
chr8 (34-128)||(8194024-8194118)
chr8 (70-128)||(10722521-10722579)
chr8 (36-105)||(26716526-26716593)
chr8 (44-94)||(29170036-29170086)
chr8 (37-94)||(8823482-8823539)
chr8 (39-96)||(18356241-18356298)
chr8 (36-129)||(27320205-27320297)
chr8 (36-101)||(40356788-40356853)
[»] scaffold0590 (1 HSPs)
scaffold0590 (36-93)||(1162-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (36-93)||(2756-2813)
[»] scaffold0024 (1 HSPs)
scaffold0024 (36-105)||(27489-27558)
[»] chr6 (14 HSPs)
chr6 (36-105)||(2514615-2514684)
chr6 (36-105)||(4248871-4248940)
chr6 (69-105)||(1497893-1497929)
chr6 (35-94)||(21959652-21959711)
chr6 (35-94)||(31670962-31671021)
chr6 (39-125)||(8349755-8349841)
chr6 (35-85)||(29940729-29940779)
chr6 (46-95)||(2727954-2728003)
chr6 (45-94)||(4247731-4247780)
chr6 (44-105)||(31668781-31668842)
chr6 (41-86)||(32917158-32917203)
chr6 (34-94)||(8010281-8010340)
chr6 (44-128)||(31828922-31829006)
chr6 (36-128)||(32975868-32975960)
[»] chr2 (19 HSPs)
chr2 (40-105)||(11393747-11393812)
chr2 (40-105)||(11410408-11410473)
chr2 (36-104)||(28803594-28803662)
chr2 (37-105)||(34339036-34339104)
chr2 (36-103)||(33197327-33197394)
chr2 (38-104)||(1493603-1493669)
chr2 (54-104)||(2400070-2400120)
chr2 (36-105)||(4550690-4550759)
chr2 (36-97)||(17952789-17952850)
chr2 (36-105)||(38239639-38239708)
chr2 (70-105)||(9404513-9404548)
chr2 (36-95)||(9478222-9478281)
chr2 (36-107)||(10143083-10143154)
chr2 (35-86)||(25609728-25609779)
chr2 (36-98)||(27288553-27288615)
chr2 (36-89)||(5045245-5045298)
chr2 (36-93)||(31461363-31461420)
chr2 (36-128)||(32098396-32098491)
chr2 (38-95)||(43431534-43431591)
[»] chr4 (16 HSPs)
chr4 (41-103)||(39929854-39929916)
chr4 (43-96)||(46415887-46415940)
chr4 (37-97)||(25487634-25487694)
chr4 (36-96)||(47970240-47970300)
chr4 (36-94)||(4191663-4191722)
chr4 (35-102)||(18630596-18630663)
chr4 (36-95)||(19422341-19422400)
chr4 (42-105)||(25409799-25409862)
chr4 (36-87)||(51044547-51044598)
chr4 (37-95)||(31059575-31059633)
chr4 (36-94)||(36734817-36734875)
chr4 (37-103)||(51555956-51556022)
chr4 (38-87)||(4798649-4798698)
chr4 (43-128)||(40709475-40709560)
chr4 (36-101)||(54325125-54325190)
chr4 (54-105)||(50298443-50298495)
[»] scaffold0044 (1 HSPs)
scaffold0044 (69-138)||(52061-52130)
[»] chr1 (13 HSPs)
chr1 (36-105)||(4200142-4200211)
chr1 (36-79)||(36151593-36151636)
chr1 (36-94)||(36602714-36602772)
chr1 (36-94)||(44032087-44032145)
chr1 (39-97)||(49557062-49557120)
chr1 (36-105)||(23895249-23895318)
chr1 (36-105)||(37818377-37818446)
chr1 (36-105)||(43372047-43372116)
chr1 (35-95)||(870968-871028)
chr1 (39-95)||(16982027-16982083)
chr1 (38-94)||(38651499-38651555)
chr1 (36-96)||(46499942-46500002)
chr1 (36-80)||(50319230-50319274)
[»] scaffold0091 (1 HSPs)
scaffold0091 (38-105)||(5932-5999)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 46759107 - 46759354
Alignment:
Q  1 tttcagcttattttcataagttcattaagacaggattgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgttt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46759107 tttcagcttattttcataagttcattaagacaggattggctttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgttt 46759206  T
Q  101 atgctgttagcgcataaataagttgttttacccaaacaaggtcttagtcaagttttacatcgcggtcaaacaactatccttgacattgtgaaaaatgcct 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46759207 atgctgttagcgcttaaataagttgttttacccaaacaaggtc-cagtcaagttttacatcgcggtcaaacaactatccttgacattgtgaaaaatgcct 46759305  T
Q  201 gtcaaatgggcttgatgtgggcttaaatgcagtcgtacacaagagagac 249  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||    
T  46759306 gtcaaatgggcttgatgtgggcttaaatgcagtcgtaaactagagagac 46759354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 38462263 - 38462194
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||||||||||||| ||| ||| |||| | |||||| |||| |||||| ||||||||||||||||||    
T  38462263 ttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataagtgtttatgct 38462194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 41028937 - 41028998
Alignment:
Q  34 gattgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataag 95  Q
    ||||||||||||||| ||| ||||||| |||| | |||||||||||||||||| ||||||||    
T  41028937 gattgactttattttttcttttgttatagaaatagcttatacataagcacttatatgataag 41028998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 27792854 - 27792796
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    ||||| ||||||||||| ||||| |||||| | |||||||||||||||||| |||||||    
T  27792854 ttgaccttattttatcttttgtttttgaaatagcttatacataagcacttatatgataa 27792796  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 33307668 - 33307728
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagt 96  Q
    |||||||||||| || | |||||| ||||| | |||||||||||||||||| |||||||||    
T  33307668 ttgactttatttcatattttgttactgaaatagcttatacataagcacttatatgataagt 33307728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 40122840 - 40122884
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataag 80  Q
    ||||||||||||||||| |||||||||||| | ||||||||||||    
T  40122840 ttgactttattttatcttttgttattgaaatagcttatacataag 40122884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 20192694 - 20192745
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaa 87  Q
    ||||||||||||||||| |||||||  ||| | |||||||||||||||||||    
T  20192694 ttgactttattttatcttttgttatataaatagcttatacataagcacttaa 20192745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 39971297 - 39971238
Alignment:
Q  40 ctttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtt 99  Q
    ||||||||||||| |||||||  ||  | |||||||||||||||||| ||||||||||||    
T  39971297 ctttattttatcttttgttatataagtaacttatacataagcacttatatgataagtgtt 39971238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 44374732 - 44374791
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataag 95  Q
    ||||||||||||||||| ||||||  || | | |||||||||||||||||| ||||||||    
T  44374732 ttgactttattttatcttttgttaaagatatagcttatacataagcacttatatgataag 44374791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 905057 - 905115
Alignment:
Q  35 attgactttattttatctattgttattgaaacaccttatacataagcacttaaatgata 93  Q
    |||||||||||||||||| ||||||| |||| | ||||||| ||||| |||| ||||||    
T  905057 attgactttattttatcttttgttatagaaatagcttatacttaagcgcttatatgata 905115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 16790444 - 16790502
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    |||| |||||||||||| |||||||  ||| | |||||||||||||||||| |||||||    
T  16790444 ttgattttattttatctgttgttataaaaatagcttatacataagcacttatatgataa 16790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 33434095 - 33434144
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcactta 86  Q
    ||||||||||||||||| |||||||| ||| | ||||||||||||||||||    
T  33434095 ttgactttattttatcttttgttatt-aaatatcttatacataagcactta 33434144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 41159092 - 41159026
Alignment:
Q  35 attgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgttta 101  Q
    |||||||||||||||||| | ||||| | || | |||||||||||||||||| | |||||| |||||    
T  41159092 attgactttattttatctttagttataggaataacttatacataagcacttatacgataagcgttta 41159026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 53457359 - 53457301
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    ||||||||||||||||| ||||||| |||  | ||||||| ||| ||||||||||||||    
T  53457359 ttgactttattttatcttttgttatcgaagtagcttatacgtaaacacttaaatgataa 53457301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 1395653 - 1395604
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcactt 85  Q
    ||||||||||||||||| ||||||| |||| | |||||||||| ||||||    
T  1395653 ttgactttattttatcttttgttatagaaatagcttatacatatgcactt 1395604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 8007783 - 8007828
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagc 81  Q
    ||||||||| ||||||| ||||||| |||||| |||||||||||||    
T  8007783 ttgactttactttatcttttgttatagaaacagcttatacataagc 8007828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 16790181 - 16790234
Alignment:
Q  41 tttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    |||||||||||| ||||||| |||| | |||||| ||||||||||| |||||||    
T  16790181 tttattttatcttttgttatagaaataacttatatataagcacttatatgataa 16790234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 28289242 - 28289278
Alignment:
Q  69 cttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  28289242 cttatacatgagcacttagatgataagtgtttatgct 28289278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 29094330 - 29094294
Alignment:
Q  69 cttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  29094330 cttatacataaacacttatatgataagtgtttatgct 29094294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 32064422 - 32064358
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgttt 100  Q
    ||||||||||||||| | ||||| | |||| | ||||||||| |||||| | |||||||||||||    
T  32064422 ttgactttattttattttttgttttagaaagaacttatacattagcactaatatgataagtgttt 32064358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 39343016 - 39342924
Alignment:
Q  35 attgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgctgttagcgcataaataagttgtt 127  Q
    ||||||||||||||||||  | ||||  ||| | ||||| || ||| |||||||||||||||| ||||||| | | ||| ||| |||||||||    
T  39343016 attgactttattttatcttgtattatgaaaatagcttattcacaagtacttaaatgataagtgattatgctataaacgcttaattaagttgtt 39342924  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 22388001 - 22388084
Alignment:
Q  45 ttttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgctgttagcgcataaataagttgttt 128  Q
    |||||||| ||||||| |||| | ||||| ||||||||||||||||||||||||||||| | | ||||| ||| ||||||||||    
T  22388001 ttttatcttttgttatagaaatagcttatccataagcacttaaatgataagtgtttatgttataagcgcttaattaagttgttt 22388084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 5373205 - 5373148
Alignment:
Q  38 gactttattttatctattgttattgaaacaccttatacataagcacttaaatgataag 95  Q
    ||||||||||||||| ||||||| |||| | | |||||||||||||||| ||||||||    
T  5373205 gactttattttatcttttgttatagaaatagcatatacataagcacttacatgataag 5373148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 31341176 - 31341108
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgc 104  Q
    ||||||||||||||||| |||||||  ||| | |||||||||||||| ||| |||||||| | ||||||    
T  31341176 ttgactttattttatcttttgttatacaaatagcttatacataagcatttagatgataagcgcttatgc 31341108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 39360003 - 39359951
Alignment:
Q  48 tatctattgttattgaaacaccttatacataagcacttaaatgataagtgttt 100  Q
    ||||| |||||||||||| | ||||||||| |||||||| |||||||||||||    
T  39360003 tatcttttgttattgaaatagcttatacatgagcacttacatgataagtgttt 39359951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 3610836 - 3610895
Alignment:
Q  44 attttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatg 103  Q
    ||||||||| ||||| | |||| | |||||||||||||||||| |||| |||||||||||    
T  3610836 attttatcttttgttgtagaaatagcttatacataagcacttatatgacaagtgtttatg 3610895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 992048 - 991994
Alignment:
Q  40 ctttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    ||||||||||| | ||||||| |||||| ||||||| |||||||||| |||||||    
T  992048 ctttattttattttttgttatagaaacaacttatacgtaagcacttatatgataa 991994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 5276206 - 5276148
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    |||||||||| |||||| |||||||  ||| | |||||||||||||||||||| |||||    
T  5276206 ttgactttatgttatcttttgttataaaaatagcttatacataagcacttaaacgataa 5276148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 7244684 - 7244626
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    |||||||| |||||||| ||| ||| |||| | |||||||||||||||||| |||||||    
T  7244684 ttgactttcttttatcttttgatatagaaatagcttatacataagcacttatatgataa 7244626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 28165073 - 28165023
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcactta 86  Q
    ||||||| ||||||||| ||||||| |||| | ||||||||||||||||||    
T  28165073 ttgacttcattttatcttttgttatagaaagaacttatacataagcactta 28165023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 33894599 - 33894549
Alignment:
Q  42 ttattttatctattgttattgaaacaccttatacataagcacttaaatgat 92  Q
    ||||||||||| ||||||| |||| | |||||||||||||||||| |||||    
T  33894599 ttattttatcttttgttatagaaatagcttatacataagcacttacatgat 33894549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 47004069 - 47004011
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    ||||||||||||||||||||||||| |||| | |||| | |||| |||||| |||||||    
T  47004069 ttgactttattttatctattgttatagaaatagcttacatataaacacttatatgataa 47004011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 21073131 - 21073098
Alignment:
Q  69 cttatacataagcacttaaatgataagtgtttat 102  Q
    ||||||||||||||||||||| ||||||||||||    
T  21073131 cttatacataagcacttaaataataagtgtttat 21073098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 23721449 - 23721412
Alignment:
Q  70 ttatacataagcacttaaatgataagtgtttatgctgt 107  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  23721449 ttatacataagcactttgatgataagtgtttatgctgt 23721412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 28440501 - 28440432
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||||||||||||| |||||| ||||| | ||||| | ||| | |||| ||||| ||||||||||||    
T  28440501 ttgactttattttatcttttgttactgaaatagcttattcttaatcgcttatatgattagtgtttatgct 28440432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 24973926 - 24973870
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgat 92  Q
    |||| |||||||||||| ||||||| |||| | ||| |||||||||||||| |||||    
T  24973926 ttgaatttattttatcttttgttatagaaatagcttttacataagcacttatatgat 24973870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 44241839 - 44241783
Alignment:
Q  39 actttattttatctattgttattgaaacaccttatacataagcacttaaatgataag 95  Q
    |||||||||||||| ||||||| |||| | ||||||||||  |||||| ||||||||    
T  44241839 actttattttatctgttgttatagaaataacttatacatacacacttatatgataag 44241783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 6738495 - 6738564
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||||||||| ||| || ||||||||| | |||||||||||| ||||| ||||||||||||||||||    
T  6738495 ttgactttattttgtcttttattattgaaatagcttatacataagtacttatatgataagtgtttatgct 6738564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 26516275 - 26516188
Alignment:
Q  41 tttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgctgttagcgcataaataagttgttt 128  Q
    |||||||||||| ||||| | |||| | |||||||||||||||||| |||||||| | ||||||| | ||||| ||| ||||||||||    
T  26516275 tttattttatcttttgttttagaaatagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaagttgttt 26516188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 39257474 - 39257578
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgctgttagcgcataaataagttgttttacccaa 135  Q
    |||||||||||||| || ||||||| || | | | |||||||||||||||| |||||||  ||||||||| | ||||| ||| ||||||| |||| ||||    
T  39257474 ttgactttattttaccttttgttatagagatagcatatacataagcacttacatgataatagtttatgctataagcgcttaattaagttg-tttatccaa 39257572  T
Q  136 acaagg 141  Q
    ||||||    
T  39257573 acaagg 39257578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 10391329 - 10391266
Alignment:
Q  42 ttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||||||| |||||||  ||| | ||||||| |||||||||| ||||||||||||||||||    
T  10391329 ttattttatcttttgttataaaaatagcttatacgtaagcacttatatgataagtgtttatgct 10391266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 20982223 - 20982282
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataag 95  Q
    ||||||||||||||||  ||||||| |||| | |||||||||||||||||| ||||||||    
T  20982223 ttgactttattttatcctttgttatagaaatagcttatacataagcacttatatgataag 20982282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 40048371 - 40048418
Alignment:
Q  39 actttattttatctattgttattgaaacaccttatacataagcactta 86  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  40048371 actttattttatcttttgttatagaaacaacttatacataagcactta 40048418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 7096215 - 7096264
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcactt 85  Q
    ||||||||||||||||| ||||||| |||| | |||||||||||||||||    
T  7096215 ttgactttattttatcttttgttatagaaatagcttatacataagcactt 7096264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 27106014 - 27106095
Alignment:
Q  39 actttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgctgttagcgcataaata 120  Q
    |||||||||||||| ||||||| ||||   ||||||| |||||||||| |  ||||||||||||||||| ||| | ||||||    
T  27106014 actttattttatcttttgttatagaaatgacttatacgtaagcacttatacaataagtgtttatgctgtaagcacttaaata 27106095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 29115302 - 29115370
Alignment:
Q  37 tgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||||||||| || ||||| | |||| | |||||||||||||||||  ||||||| ||||||||||    
T  29115302 tgactttattttaccttttgttgtagaaatagcttatacataagcacttttatgataaatgtttatgct 29115370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 13224406 - 13224320
Alignment:
Q  41 tttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgctgttagcgcataaataagttgttt 128  Q
    |||||||||||| ||||||| |||| | |||||||||||||||||  ||||||| || ||||||||  ||||| ||  ||||||||||    
T  13224406 tttattttatcttttgttatagaaatagcttatacataagcacttctatgataactg-ttatgctgcaagcgcttatttaagttgttt 13224320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 29588856 - 29588793
Alignment:
Q  42 ttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||||| | ||||||| |||| | |||||||||||||||||| || | |||||||||||||    
T  29588856 ttattttatattttgttatagaaatagcttatacataagcacttatataaaaagtgtttatgct 29588793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 32059677 - 32059743
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatg 103  Q
    ||||||||||||||||| | ||||   ||||| |||||||||||||||||| ||||||||| ||||||    
T  32059677 ttgactttattttatct-tagttacaaaaacagcttatacataagcacttatatgataagtatttatg 32059743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 34690855 - 34690800
Alignment:
Q  37 tgactttattttatctattgttattgaaacaccttatacataagcacttaaatgat 92  Q
    |||||||||||||||| ||||||| |||| | | |||||||||| |||||||||||    
T  34690855 tgactttattttatcttttgttatagaaatagcgtatacataaggacttaaatgat 34690800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 35135750 - 35135809
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataag 95  Q
    ||||||||||||||||| ||||||| |||| | ||||||||||| |||||| ||| ||||    
T  35135750 ttgactttattttatcttttgttatagaaatatcttatacataaacacttatatgttaag 35135809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 39128621 - 39128530
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgctgttagcgcataaataagttgtt 127  Q
    ||||||||||||||||| ||||||| |||  | ||||||||||||||| || || | ||  | ||||||| | ||||||||| |||||||||    
T  39128621 ttgactttattttatcttttgttatagaattagcttatacataagcacatatattaaaaaagcttatgctataagcgcataactaagttgtt 39128530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 17756817 - 17756875
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    |||||||||||||||||  |||||  |||||| || ||||||||||||||| |||||||    
T  17756817 ttgactttattttatcttctgttaaagaaacaactcatacataagcacttatatgataa 17756875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 37063162 - 37063231
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||||||||||||| ||||||| |||| |  ||||||||||||| ||| |||| |||  ||||||||    
T  37063162 ttgactttattttatcttttgttatagaaatagtttatacataagcatttatatgacaagcatttatgct 37063231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 27104535 - 27104571
Alignment:
Q  69 cttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  27104535 cttatacgtaagcacttatatgataagtgtttatgct 27104571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 32172635 - 32172543
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgctgttagcgcataaataagttgttt 128  Q
    ||||||| ||||||||| ||||| | |||| |  |||||||||||| |||  |||||||| | ||||||||| ||||| ||| || |||||||    
T  32172635 ttgacttcattttatcttttgttgtagaaatagtttatacataagctcttgtatgataagcgcttatgctgtaagcgcttaattatgttgttt 32172543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 12972833 - 12972746
Alignment:
Q  41 tttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgctgttagcgcataaataagttgttt 128  Q
    ||||||| ||||  ||||||||||| | |||||||||||||||||| ||||||| || ||||||| | ||||| ||| ||||||||||    
T  12972833 tttatttcatcttctgttattgaaatagcttatacataagcacttatatgataaatgcttatgctataagcgcttaattaagttgttt 12972746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 34563232 - 34563140
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgctgttagcgcataaataagttgttt 128  Q
    ||||||||||||||||  |||| || |||| | |||||| ||||||||||| ||||||| |||||||||| | ||||  ||| ||||||||||    
T  34563232 ttgactttattttatcctttgtcatagaaataacttatatataagcacttatatgataaatgtttatgctataagcgtttaattaagttgttt 34563140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 14482184 - 14482125
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataag 95  Q
    ||||||||||||||||| ||||||| |||| |  ||||||||||||||||| ||||||||    
T  14482184 ttgactttattttatcttttgttatagaaatagtttatacataagcacttatatgataag 14482125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 35298570 - 35298624
Alignment:
Q  40 ctttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    ||||||||||||| |||||| ||||| | |||||||||||||||||| |||||||    
T  35298570 ctttattttatcttttgttactgaaatagcttatacataagcacttatatgataa 35298624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 4558777 - 4558688
Alignment:
Q  39 actttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgctgttagcgcataaataagttgttt 128  Q
    |||||||||||||| || |||| |||| | ||||||||||| |||||| || ||||  ||||||||| | ||||| ||| ||||||||||    
T  4558777 actttattttatcttttattatagaaatagcttatacataaacacttacataataaacgtttatgctataagcgcgtaattaagttgttt 4558688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 11188248 - 11188293
Alignment:
Q  41 tttattttatctattgttattgaaacaccttatacataagcactta 86  Q
    |||||||||||| ||||||| |||||| ||||||||||||||||||    
T  11188248 tttattttatcttttgttatagaaacaacttatacataagcactta 11188293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 29699236 - 29699167
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||||||||||||| ||||||| |||| | ||| |||||||||| ||| ||||||| | ||||||||    
T  29699236 ttgactttattttatcttttgttatagaaataacttgtacataagcatttatatgataaatatttatgct 29699167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 5226582 - 5226515
Alignment:
Q  38 gactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||| ||||||||| ||||||||||||    |||||||||| |||||| ||||||| ||||||||||    
T  5226582 gacttgattttatcttttgttattgaaattgtttatacataaacacttatatgataaatgtttatgct 5226515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 787194 - 787252
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    |||||||||||||||||  |||||  |||||| |||| ||||||||||||| |||||||    
T  787194 ttgactttattttatcttatgttacggaaacagcttaaacataagcacttagatgataa 787252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 8194024 - 8194118
Alignment:
Q  34 gattgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgctgttagcgcataaataagttgttt 128  Q
    |||||||||||||||| || |  |||| |||| | ||||| |||||||||||||||||| | || ||||||| | || || ||| ||||||||||    
T  8194024 gattgactttattttaactttacttatagaaatagcttatccataagcacttaaatgatgaatgcttatgctataagggcttaattaagttgttt 8194118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 10722579 - 10722521
Alignment:
Q  70 ttatacataagcacttaaatgataagtgtttatgctgttagcgcataaataagttgttt 128  Q
    ||||||| ||||||||| |||||| ||||||||||| | ||||| ||| ||||||||||    
T  10722579 ttatacacaagcacttatatgatatgtgtttatgctttaagcgcttaattaagttgttt 10722521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 26716526 - 26716593
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    |||||||||||| ||||  |||||| |||  | |||||||||||||||||| || |||||||||||||||    
T  26716526 ttgactttatttaatct--tgttatagaagtagcttatacataagcacttatataataagtgtttatgct 26716593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 29170036 - 29170086
Alignment:
Q  44 attttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    |||||||||||| |||| |||| | |||||||||||||||||| |||||||    
T  29170036 attttatctattcttatagaaagaacttatacataagcacttatatgataa 29170086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 8823482 - 8823539
Alignment:
Q  37 tgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    ||||||| |||||||| ||||||| ||||   |||||| |||||||||||||||||||    
T  8823482 tgactttgttttatcttttgttatagaaatggcttatatataagcacttaaatgataa 8823539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 18356298 - 18356241
Alignment:
Q  39 actttattttatctattgttattgaaacaccttatacataagcacttaaatgataagt 96  Q
    |||||||||||||| ||| ||| |||||| |||| ||||||||| ||| |||||||||    
T  18356298 actttattttatcttttgctatagaaacaacttacacataagcaattatatgataagt 18356241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 27320297 - 27320205
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgctgttagcgcataaataagttgtttt 129  Q
    |||||||||||| |||| ||| ||| | || | ||||||| ||||||||||  ||||||||||||||||| | ||||| ||| ||| |||||||    
T  27320297 ttgactttattt-atcttttgctataggaatagcttatacgtaagcacttatgtgataagtgtttatgctataagcgcttaattaaattgtttt 27320205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 40356853 - 40356788
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgttta 101  Q
    ||||||||||||||||| || ||||  ||| | |||||| ||||||||||| |||| |||||||||    
T  40356853 ttgactttattttatcttttattatataaatagcttatagataagcacttatatgacaagtgttta 40356788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 1162 - 1219
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgata 93  Q
    ||||||||||||||||| ||||||| |||| | |||||||||||||||||| ||||||    
T  1162 ttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgata 1219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 2813 - 2756
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgata 93  Q
    ||||||||||||||||| ||||||| |||| | |||||||||||||||||| ||||||    
T  2813 ttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgata 2756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 27558 - 27489
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    |||||||||||||||||  |||||| |||| | |||||||||||||||||| |||||||| | |||||||    
T  27558 ttgactttattttatcttctgttatagaaataacttatacataagcacttacatgataagagcttatgct 27489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 2514684 - 2514615
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||||||||||||| || |||| |||| | |||||||||||||||||| ||||||||  ||||||||    
T  2514684 ttgactttattttatcttttattatagaaatagcttatacataagcacttacatgataagcatttatgct 2514615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 4248940 - 4248871
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||||||||||||| |||||||||||| | |||||| ||||||||||| |||| ||| | |||||||    
T  4248940 ttgactttattttatcttttgttattgaaatagcttatatataagcacttatatgacaagcgcttatgct 4248871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 1497929 - 1497893
Alignment:
Q  69 cttatacataagcacttaaatgataagtgtttatgct 105  Q
    |||| ||||||||||||||||||||||||||||||||    
T  1497929 cttaaacataagcacttaaatgataagtgtttatgct 1497893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 21959711 - 21959652
Alignment:
Q  35 attgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    |||||||||||||||||| ||||||| |||| | ||||||| |||||||||  |||||||    
T  21959711 attgactttattttatcttttgttatggaaatagcttatacttaagcacttctatgataa 21959652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 31670962 - 31671021
Alignment:
Q  35 attgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    ||||| |||||||||||||||||||| ||||   |||||| ||||||||||| |||||||    
T  31670962 attgaatttattttatctattgttatagaaatgacttatatataagcacttatatgataa 31671021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 8349755 - 8349841
Alignment:
Q  39 actttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgctgttagcgcataaataagttg 125  Q
    |||||||||||||| ||||||  |||| |  ||||||| || |||||| |||||||||| ||||||| | ||||| ||| |||||||    
T  8349755 actttattttatcttttgttagagaaatagtttatacacaaacacttatatgataagtggttatgctataagcgcttaattaagttg 8349841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 29940779 - 29940729
Alignment:
Q  35 attgactttattttatctattgttattgaaacaccttatacataagcactt 85  Q
    |||||||||||||||||| ||||||| |||| | ||||||| |||||||||    
T  29940779 attgactttattttatcttttgttatagaaaaagcttatacttaagcactt 29940729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 2727954 - 2728003
Alignment:
Q  46 tttatctattgttattgaaacaccttatacataagcacttaaatgataag 95  Q
    ||||||| ||||||| ||| || |||||||||||||||||| ||||||||    
T  2727954 tttatcttttgttatagaagcagcttatacataagcacttatatgataag 2728003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 4247731 - 4247780
Alignment:
Q  45 ttttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    |||||||| ||||||| |||| | |||||||||||||||||| |||||||    
T  4247731 ttttatcttttgttatagaaatagcttatacataagcacttacatgataa 4247780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 31668781 - 31668842
Alignment:
Q  44 attttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||| | ||||||| |||| | |||||||||||||||||| ||||||| || |||||||    
T  31668781 attttatgttttgttatagaaatagcttatacataagcacttatatgataattgcttatgct 31668842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 32917203 - 32917158
Alignment:
Q  41 tttattttatctattgttattgaaacaccttatacataagcactta 86  Q
    |||||||||||| ||| |||||||| | ||||||||||||||||||    
T  32917203 tttattttatcttttgctattgaaatagcttatacataagcactta 32917158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 8010340 - 8010281
Alignment:
Q  34 gattgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    ||||||||||||||||| | ||||||| |||| | ||||||| |||||||||| |||||||    
T  8010340 gattgactttattttat-tgttgttatagaaatagcttatacctaagcacttatatgataa 8010281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 31829006 - 31828922
Alignment:
Q  44 attttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgctgttagcgcataaataagttgttt 128  Q
    ||||||| | ||| ||| |||||| ||||| | |||||| ||| |||||||||||||| ||| | ||||| ||| ||||||||||    
T  31829006 attttattttttgatatagaaacagcttatgcgtaagcaattatatgataagtgtttacgctataagcgcttaattaagttgttt 31828922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 32975960 - 32975868
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgctgttagcgcataaataagttgttt 128  Q
    ||||||||||||||| | ||||||  |||| | ||||||||||| |||||| |||| ||| | ||||||| | | ||| ||| ||||||||||    
T  32975960 ttgactttattttatattttgttacagaaataacttatacataaacacttatatgagaagcgcttatgctataaacgcttaattaagttgttt 32975868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 11393747 - 11393812
Alignment:
Q  40 ctttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||| ||||| ||| ||| |||| | |||||||||||||||||||||||||| ||||||||||    
T  11393747 ctttattgtatcttttggtatagaaatagcttatacataagcacttaaatgataaatgtttatgct 11393812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 11410408 - 11410473
Alignment:
Q  40 ctttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||| ||||| ||| ||| |||| | |||||||||||||||||||||||||| ||||||||||    
T  11410408 ctttattgtatcttttggtatagaaatagcttatacataagcacttaaatgataaatgtttatgct 11410473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 28803594 - 28803662
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgc 104  Q
    ||||||||||||||||| ||||||| |||| | |||||| ||||||||||| ||||||||  |||||||    
T  28803594 ttgactttattttatcttttgttatcgaaataacttatatataagcacttatatgataagcatttatgc 28803662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 34339104 - 34339036
Alignment:
Q  37 tgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    |||||||||||||||| | | ||| |||| |  ||||||||||||||||| ||||||||||||||||||    
T  34339104 tgactttattttatctttagctatagaaaaagtttatacataagcacttatatgataagtgtttatgct 34339036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 33197327 - 33197394
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatg 103  Q
    ||||||||||| ||||| ||||||| |||| | |||||| ||||||||||| |||||||| |||||||    
T  33197327 ttgactttattctatcttttgttatagaaatagcttatagataagcacttatatgataagcgtttatg 33197394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 1493603 - 1493669
Alignment:
Q  38 gactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgc 104  Q
    ||||||||||||||||||||||| |||| |  ||||| ||||||| ||| |||||||| ||||||||    
T  1493603 gactttattttatctattgttatagaaagagtttataaataagcaattatatgataagagtttatgc 1493669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 2400120 - 2400070
Alignment:
Q  54 ttgttattgaaacaccttatacataagcacttaaatgataagtgtttatgc 104  Q
    ||||||| |||||| |||||||||||||||||| ||||||| |||||||||    
T  2400120 ttgttatagaaacaacttatacataagcacttatatgataattgtttatgc 2400070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 4550759 - 4550690
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||| ||||||||||| || |||| |||||| ||||||||||||||||||  ||||||| | |||||||    
T  4550759 ttgacgttattttatcttttattatggaaacaacttatacataagcacttatgtgataagagattatgct 4550690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 17952789 - 17952850
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtg 97  Q
    ||||||||||||||||| ||||||| |||| | |||||| |||||| |||| ||||||||||    
T  17952789 ttgactttattttatcttttgttatagaaatagcttatatataagctcttatatgataagtg 17952850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 38239639 - 38239708
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||| ||||||||| ||||||| |||| | ||||||||||| |||||| ||||| |||| |||||||    
T  38239639 ttgacttgattttatcttttgttatagaaatagcttatacataaacacttacatgatgagtgcttatgct 38239708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 105
Target Start/End: Complemental strand, 9404548 - 9404513
Alignment:
Q  70 ttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||||||||||||| ||||||||||||||||||    
T  9404548 ttatacataagcacttatatgataagtgtttatgct 9404513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 9478281 - 9478222
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataag 95  Q
    |||| ||||||||||||| |||||| |||| | ||||||||||| |||||| ||||||||    
T  9478281 ttgagtttattttatctactgttatagaaatagcttatacataaacacttatatgataag 9478222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 10143154 - 10143083
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgctgt 107  Q
    ||||||| ||||||||| ||||||| |||| | ||||||||||||||||||   ||||||| ||| ||||||    
T  10143154 ttgacttaattttatcttttgttatagaaataacttatacataagcacttattcgataagtttttgtgctgt 10143083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 25609779 - 25609728
Alignment:
Q  35 attgactttattttatctattgttattgaaacaccttatacataagcactta 86  Q
    |||||||||||||||||| || |||| |||| | ||||||||||||||||||    
T  25609779 attgactttattttatcttttcttatagaaatagcttatacataagcactta 25609728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 27288615 - 27288553
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgt 98  Q
    |||| |||||||||||| || |||| |||||| ||| |||||||||||||| | |||||||||    
T  27288615 ttgattttattttatcttttattatagaaacaacttttacataagcacttataggataagtgt 27288553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 5045245 - 5045298
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaat 89  Q
    ||||||||||||||||| |||||||  ||| | ||||||||||| |||||||||    
T  5045245 ttgactttattttatcttttgttataaaaatagcttatacataaacacttaaat 5045298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 31461420 - 31461363
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgata 93  Q
    ||||||||||||||||| ||||||| |||| | |||||| |||| |||||| ||||||    
T  31461420 ttgactttattttatcttttgttatagaaatagcttatatataaccacttatatgata 31461363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 32098396 - 32098491
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcact---taaatgataagtgtttatgctgttagcgcataaataagttgttt 128  Q
    ||||||||||||||||| ||||||| |||| | |||||| ||||||| |   || ||||||| |||||||||| | ||| | ||| ||||||||||    
T  32098396 ttgactttattttatcttttgttatagaaatagcttatatataagcatttagtatatgataactgtttatgctataagcacttaagtaagttgttt 32098491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 43431534 - 43431591
Alignment:
Q  38 gactttattttatctattgttattgaaacaccttatacataagcacttaaatgataag 95  Q
    ||||||| ||||||| |||||||||||| | ||||||||| | |||||| ||||||||    
T  43431534 gactttactttatcttttgttattgaaataacttatacattaacacttatatgataag 43431591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 39929854 - 39929916
Alignment:
Q  41 tttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatg 103  Q
    ||||||||| || || | || |||||| |||||||||||||||||||||||||| ||||||||    
T  39929854 tttattttaccttttataatagaaacaacttatacataagcacttaaatgataaatgtttatg 39929916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 46415887 - 46415940
Alignment:
Q  43 tattttatctattgttattgaaacaccttatacataagcacttaaatgataagt 96  Q
    |||||||||| |||||||||||| | ||||||| |||||||||| |||||||||    
T  46415887 tattttatcttttgttattgaaatagcttatacgtaagcacttagatgataagt 46415940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 25487634 - 25487694
Alignment:
Q  37 tgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtg 97  Q
    |||||||||||||| | ||||||| |||| | |||||||||||||| ||||| ||||||||    
T  25487634 tgactttattttattttttgttatagaaatagcttatacataagcatttaaaggataagtg 25487694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 47970300 - 47970240
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagt 96  Q
    ||||||| ||||||||| ||||||| |||| | |||||||||||||||||| |||| ||||    
T  47970300 ttgacttcattttatcttttgttatagaaatagcttatacataagcacttatatgacaagt 47970240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 4191722 - 4191663
Alignment:
Q  36 ttgactttatttt-atctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    ||||||||||||| |||| ||||||| |||| | |||||||||||||||||| |||||||    
T  4191722 ttgactttatttttatcttttgttatagaaatagcttatacataagcacttatatgataa 4191663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 18630663 - 18630596
Alignment:
Q  35 attgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttat 102  Q
    |||||||||||||||||| |||||||||||| |  |||| ||||||| |||| ||||||  |||||||    
T  18630663 attgactttattttatcttttgttattgaaatagtttatgcataagcgcttatatgatacatgtttat 18630596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 19422400 - 19422341
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataag 95  Q
    ||||||||||| ||||| ||||||| |||| | |||||||||||||| ||| ||||||||    
T  19422400 ttgactttattatatcttttgttatagaaataacttatacataagcatttatatgataag 19422341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 25409862 - 25409799
Alignment:
Q  42 ttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    |||| |||||| || ||| ||||| |||||| ||||||||| ||| ||||||||||||||||||    
T  25409862 ttatcttatctttttttaatgaaataccttagacataagcagttatatgataagtgtttatgct 25409799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 51044547 - 51044598
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaa 87  Q
    ||||||||||||||||| ||||||| |||| | ||||||||||| |||||||    
T  51044547 ttgactttattttatcttttgttatagaaatagcttatacataaacacttaa 51044598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 31059633 - 31059575
Alignment:
Q  37 tgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataag 95  Q
    |||||||||||| ||||||||||| |||||| ||||| |||| | ||||| ||||||||    
T  31059633 tgactttattttttctattgttatagaaacaacttatgcataggtacttacatgataag 31059575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 36734875 - 36734817
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    |||||||||||||| || ||||||| |||| |  ||||||||||||||||| |||||||    
T  36734875 ttgactttattttaccttttgttatagaaagagattatacataagcacttatatgataa 36734817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 51555956 - 51556022
Alignment:
Q  37 tgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatg 103  Q
    |||||||||||||||| |||||||   || | |||||||||||||||||| ||||||| || |||||    
T  51555956 tgactttattttatcttttgttataataatagcttatacataagcacttatatgataaatggttatg 51556022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 4798649 - 4798698
Alignment:
Q  38 gactttattttatctattgttattgaaacaccttatacataagcacttaa 87  Q
    ||||||||||||||| ||| ||| |||| | |||||||||||||||||||    
T  4798649 gactttattttatcttttgatatagaaatagcttatacataagcacttaa 4798698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 40709475 - 40709560
Alignment:
Q  43 tattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgctgttagcgcataaataagttgttt 128  Q
    |||||||||| ||||||| |||||| |||||| ||||||||||| ||  |||||| ||||| | | ||| | ||| ||||||||||    
T  40709475 tattttatcttttgttatagaaacagcttataaataagcacttatatattaagtggttatgatataagcacttaattaagttgttt 40709560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 54325125 - 54325190
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgttta 101  Q
    ||||||||||||||||| |||| || |||| |  ||||||| ||||||||| ||||||||| ||||    
T  54325125 ttgactttattttatcttttgtaatagaaatagtttatacacaagcacttatatgataagtattta 54325190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 50298495 - 50298443
Alignment:
Q  54 ttgttattgaaacaccttatacataagcactta-aatgataagtgtttatgct 105  Q
    ||||||| |||||| |||||||||||||| |||  ||||||||||||||||||    
T  50298495 ttgttatggaaacaacttatacataagcatttatcatgataagtgtttatgct 50298443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 52061 - 52130
Alignment:
Q  69 cttatacataagcacttaaatgataagtgtttatgctgttagcgcataaataagttgttttacccaaaca 138  Q
    |||||||||||||||||| ||| ||||| |||||||| |||| || ||| |||||| ||||| |||||||    
T  52061 cttatacataagcacttatatgttaagtctttatgctattagagcttaattaagtttttttatccaaaca 52130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 4200211 - 4200142
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||||||||||||||| |||||||  ||| | |||||| |||| |||||| |||||||||| |||||||    
T  4200211 ttgactttattttatcttttgttataaaaataacttatatataaacacttagatgataagtgcttatgct 4200142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 36151593 - 36151636
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataa 79  Q
    ||||||||||||||||| |||||||||||| | |||||||||||    
T  36151593 ttgactttattttatcttttgttattgaaatagcttatacataa 36151636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 36602772 - 36602714
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    ||||||||||||||||||||||| | || | | ||||||||||| |||||| |||||||    
T  36602772 ttgactttattttatctattgttgtagatatagcttatacataatcacttatatgataa 36602714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 44032087 - 44032145
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    |||||||||||||| || ||||||| |||||  ||||||||||| |||||| |||||||    
T  44032087 ttgactttattttagcttttgttatagaaacggcttatacataaacacttatatgataa 44032145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 49557120 - 49557062
Alignment:
Q  39 actttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtg 97  Q
    |||||||||||||| ||||||| |||| | ||||||||  |||||||| ||||||||||    
T  49557120 actttattttatcttttgttatagaaataacttatacagcagcacttatatgataagtg 49557062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 23895318 - 23895249
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    |||| |||||||||||| ||||||| |||| | |||||||||||  ||||| |||||||| | |||||||    
T  23895318 ttgaatttattttatcttttgttatagaaatagcttatacataataacttatatgataagggcttatgct 23895249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 37818446 - 37818377
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    |||||||  |||||||| ||||||| |||| | ||||||||||||||||||  || |||||| |||||||    
T  37818446 ttgacttcgttttatctcttgttatagaaataacttatacataagcacttatttggtaagtgcttatgct 37818377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 43372047 - 43372116
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    |||||| |||||||||||||||||| |||| | | |||||||||||  ||| |||||||| | |||||||    
T  43372047 ttgactctattttatctattgttatagaaatagcctatacataagccattatatgataagcgcttatgct 43372116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 871028 - 870968
Alignment:
Q  35 attgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataag 95  Q
    |||||||| ||||||||| |||||||  ||| |  ||||||||||||||||| ||||||||    
T  871028 attgacttaattttatcttttgttataaaaatagtttatacataagcacttatatgataag 870968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 16982027 - 16982083
Alignment:
Q  39 actttattttatctattgttattgaaacaccttatacataagcacttaaatgataag 95  Q
    |||||||||||||| ||||||| |||| |  |||||||||| |||||| ||||||||    
T  16982027 actttattttatcttttgttatcgaaataagttatacataaacacttatatgataag 16982083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 38651499 - 38651555
Alignment:
Q  38 gactttattttatctattgttattgaaacaccttatacataagcacttaaatgataa 94  Q
    ||||||| ||||||| ||||||| |||  | |||||||||||||||||| |||||||    
T  38651499 gactttagtttatcttttgttatagaattagcttatacataagcacttacatgataa 38651555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 46499942 - 46500002
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagt 96  Q
    ||||||||||||||||| || |||| |||| | |||||| ||||||||||| ||| |||||    
T  46499942 ttgactttattttatcttttcttatagaaatagcttatagataagcacttatatgttaagt 46500002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 50319274 - 50319230
Alignment:
Q  36 ttgactttattttatctattgttattgaaacaccttatacataag 80  Q
    ||||||||||||||||| ||||||| |||| | ||||||||||||    
T  50319274 ttgactttattttatcttttgttatagaaatagcttatacataag 50319230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 5999 - 5932
Alignment:
Q  38 gactttattttatctattgttattgaaacaccttatacataagcacttaaatgataagtgtttatgct 105  Q
    ||||| ||||||||| ||||||||||||    |||||||||| |||||| ||||||| ||||||||||    
T  5999 gacttgattttatcttttgttattgaaattgtttatacataaacacttatatgataaatgtttatgct 5932  T

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