View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3283_low_26 (Length: 254)
Name: NF3283_low_26
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 24658213 - 24658073
Alignment:
| Q |
77 |
tttttagttttggtgtgctgctgcttttgtgtggtctgtcactttaggagtaagtatttttggcttgcataatgtttatttttatagaattgttaagtat |
176 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24658213 |
tttttagttttggtgtgctgctgcttctgtgtggtctgtcactttggcagtaagcatttttggcttgcataatgtttatttttatagaattgttgagtat |
24658114 |
T |
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| Q |
177 |
tgggttggcatgtgtttgctcttttgtttttggtacctttg |
217 |
Q |
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| T |
24658113 |
tgggttggcatgtgtttgctcttttgcttttggcacctttg |
24658073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 48089431 - 48089327
Alignment:
| Q |
113 |
tgtcactttaggagtaagtatttttggcttgcataatgtttatttttatagaattgttaagtattgggttggcatgtgtttgctcttttgtttttggtac |
212 |
Q |
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| T |
48089431 |
tgtcactttagcggtaagtatttttggtgtgcatagtgtttatttttatgaaattgctaagtattaggttggcaggtgcttgttcttttgcttttagcac |
48089332 |
T |
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| Q |
213 |
ctttg |
217 |
Q |
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||||| |
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| T |
48089331 |
ctttg |
48089327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 24658277 - 24658232
Alignment:
| Q |
35 |
tggaacatgttagcatcattattggtagcgctagccagtttatttt |
80 |
Q |
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| T |
24658277 |
tggaatatgttagcatcattattggtagcgctagccagtttatttt |
24658232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 24658313 - 24658232
Alignment:
| Q |
11 |
aggcatgtatgcggctgcttctgttggaac------------atgttagcatcattattggtagcgctagccagtttatttt |
80 |
Q |
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| T |
24658313 |
aggcatgtatgcggctgcttctgttggaacatttgatggaatatgttagcatcattattggtagcgctagccagtttatttt |
24658232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 217
Target Start/End: Original strand, 33003121 - 33003250
Alignment:
| Q |
84 |
ttttggtgtgctgctgcttttgtgtggtctgtcactttaggagtaagtatttttggcttgcataatgtttatttttatagaattgttaagtattgggttg |
183 |
Q |
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| T |
33003121 |
ttttggtgtgatgttgcttctatgtggtatgttactttagcagtaagcattttt----tgcatggtgtttatttttatggaattgccgagtattgagttg |
33003216 |
T |
|
| Q |
184 |
gcatgtgtttgctcttttgtttttggtacctttg |
217 |
Q |
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||| ||| ||||| ||||| |||||| ||||||| |
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| T |
33003217 |
gcaggtgcttgcttttttgcttttgggacctttg |
33003250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 80 - 217
Target Start/End: Complemental strand, 18076027 - 18075887
Alignment:
| Q |
80 |
ttagttttggtgtgctgctgcttttgtgtggtctgtcactttaggagtaagta---tttttggcttgcataatgtttatttttatagaattgttaagtat |
176 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||| |||||||| ||||| |
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| T |
18076027 |
ttagttttgatgtgctgctgcttttgtgtggtctgtcactttagcggtaagcaatttttttggcttgcatagtgtttatttttatggaattgttgagtat |
18075928 |
T |
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| Q |
177 |
tgggttggcatgtgtttgctcttttgtttttggtacctttg |
217 |
Q |
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| T |
18075927 |
tgggttggcaggtgcttgctcttttgcttttagcacctttg |
18075887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 80 - 217
Target Start/End: Complemental strand, 40372953 - 40372817
Alignment:
| Q |
80 |
ttagttttggtgtgctgctgcttttgtgtggtctgtcactttaggagtaagtatttttggcttgcataatgtttatttttatagaattgttaagtattgg |
179 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||| | | || |||||||||||||||| ||||||||||||| |||||| | ||||||| |
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| T |
40372953 |
ttagttttggtgtgttgctgcttt-gtgtggtctgtcactttagcaattagcatttttggcttgcatagtgtttatttttatggaattgctgagtattga |
40372855 |
T |
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| Q |
180 |
gttggcatgtgtttgctcttttgtttttggtacctttg |
217 |
Q |
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||||||| ||||||||||||||| |||| | ||||||| |
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| T |
40372854 |
gttggcaggtgtttgctcttttgctttttgcacctttg |
40372817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 2081568 - 2081671
Alignment:
| Q |
111 |
tctgtcactttaggagtaagtatttttggcttgcataatgtttatttttatagaattgttaagtattgggttggcatgtgtttgctcttttgtttttggt |
210 |
Q |
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||||||||||||| |||||| |||||||||||||||| ||||||||||||| |||||| ||||||||||||||| ||| ||||||||||| |||||| |
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| T |
2081568 |
tctgtcactttagcagtaagcatttttggcttgcatagtgtttatttttatggaattgccgagtattgggttggcaggtgcttgctcttttgcttttggc |
2081667 |
T |
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| Q |
211 |
acct |
214 |
Q |
| |
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|||| |
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| T |
2081668 |
acct |
2081671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 42528798 - 42528746
Alignment:
| Q |
132 |
atttttggcttgcataatgtttatttttatagaattgttaagtattgggttgg |
184 |
Q |
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| T |
42528798 |
atttttggattgcatagtgtttatttttatggaattgccgagtattgggttgg |
42528746 |
T |
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