View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3283_low_35 (Length: 237)
Name: NF3283_low_35
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 43445106 - 43444887
Alignment:
| Q |
1 |
caaacctcagattggaaaaacctcaacctttccggccacaaccaagtaacaataggtctcccaattaacttagacaaaaagaaacatgaagaagctccag |
100 |
Q |
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| T |
43445106 |
caaacctcagattggaaaaacctcaacctttccggccacaaccaagtaacaataggtctcccaattaacttagacaaaaagaaacatgaagaagctccag |
43445007 |
T |
|
| Q |
101 |
cagtagcattgaaaacaaccaacattatccctctaacaactccaaaaagtgcaccagctaacaatgacatgaaaattgttccaggaatcataaatgtctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43445006 |
cagtagcattgaaaacaaccaacattatccctctaacaactccaaaaagtgcaccagctaacaatgacatgaaaattgttccaggaatcataaatgtctg |
43444907 |
T |
|
| Q |
201 |
cataaaaatatacgttgaac |
220 |
Q |
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|||||||||||||||||||| |
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| T |
43444906 |
cataaaaatatacgttgaac |
43444887 |
T |
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