View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3283_low_36 (Length: 230)
Name: NF3283_low_36
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 37748453 - 37748648
Alignment:
| Q |
16 |
agagatgatcagatttaccggtgacaagtgctttctgaagctgtccacttattccagtactccaaggtctaacaatagctaacttattggttttacaaag |
115 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37748453 |
agagatggtcagatttaccggtgacaagtgctttctgaagctgtccacttattccagtactccaaggtctaacaatagctaacttattggttttacaaag |
37748552 |
T |
|
| Q |
116 |
atatataccaatgcttgaaataacaagaaaaacagcaccaccaataattactccagcaaaaataggaacttgattcttctttgacagtggaggaag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37748553 |
atatataccaatgcttgaaataacaagaaaaacagcaccaccaataattactccagcaaaaataggaacttgattcttctttgacagtggaggaag |
37748648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 32067510 - 32067618
Alignment:
| Q |
28 |
atttaccggtgacaagtgctttctgaagctgtccacttattccagtactccaaggtctaacaatagctaacttattggttttacaaagatatataccaat |
127 |
Q |
| |
|
||||||| || |||| ||| ||||||||||||||||||| ||| ||| ||| ||| |||| | |||| ||| ||||||||| | |||||||| |||| |
|
|
| T |
32067510 |
atttacctgtcacaaatgccttctgaagctgtccacttaatcctgtagcccatggtttaacggtggctaccttgttggttttaaagagatatatgacaat |
32067609 |
T |
|
| Q |
128 |
gcttgaaat |
136 |
Q |
| |
|
|||| |||| |
|
|
| T |
32067610 |
gcttaaaat |
32067618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University