View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3283_low_4 (Length: 716)
Name: NF3283_low_4
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 657; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 18 - 702
Target Start/End: Original strand, 2099245 - 2099930
Alignment:
| Q |
18 |
cctagtatatcagaactctgcactgacttgcatccaaagttgctttaaaaccaaaaatcatctttgctttgtgtttagttttctgcatcagtagnnnnnn |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2099245 |
cctagtatatcagaactctgcactgacttgcatccaaagttgctttaaaaccaaaaatcatctttgctttgtgtttagttttctgcatcagtagaaaaaa |
2099344 |
T |
|
| Q |
118 |
ntttcatttagataattttttgggagaaatattttgaacaatctattaacttgtcttaa-tctgtatttaattgatcttaaactttatgtagatggtcaa |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2099345 |
atttcatttagataattttttgggagaaatattttgaacaatctattaacttgtcttaaatctgtatttaattgatcttaaactttatgtagatggtcaa |
2099444 |
T |
|
| Q |
217 |
gttcaagaagatcgcatgaattaacgatcatctgacagcatgccactgtcaaaaactattggcaactatgttacatttctgtctagcaactagtaagtac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2099445 |
gttcaagaagatcgcatgaattaacgatcatctgacagcatgccactgtcaaaaactattggcaactatgttacatttctgtctagcaactagtaagtac |
2099544 |
T |
|
| Q |
317 |
tacagtttagcaaattggtggtttcacatgtgaactggcatgtcaaaggtcaaatgttgtttgtaatattgtaaatttgaacatgcccaatgtgtagatg |
416 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2099545 |
tacagtttagcaaattggtggtttcacatgtgaactggcatgtcaaaggtcaaatgttgtttgtaatattgtaaatttgaacatgcccaatgtgtagatg |
2099644 |
T |
|
| Q |
417 |
cccaccattagcagtttagggacttaaaatttctgtcatgttgtttggatcttatgtgcccatttcaatttctattttctatgttcatctgaaaaattct |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2099645 |
cccaccattagcagtttagggacttaaaatttctgtcatgttgtttggatcttatgtgcccatttcaatttctattttctatgttcatctgaaaaattct |
2099744 |
T |
|
| Q |
517 |
ttgctgtgtgataatcactatgaatggtgatagatgttatgaccccaaaaagaagcttcattttgatacattatattcttcctaatatttttactaaaat |
616 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2099745 |
ttgctgtgtgataatcactatgaatggtgatagatgttatgaccccaaaaagaagcttcattttgatacattatattcttcctaatatttttactaaaat |
2099844 |
T |
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| Q |
617 |
tttagggaattagtagaacatagaatacaatttgtctaaagaagtattaggaaacttgattttgaaaacctccaactccacctttg |
702 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2099845 |
tttagggaattagtagaacatagaatacaatttgtctaaagaagtattaggaaacttgattttgaaaacctccaactccacctttg |
2099930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 685
Target Start/End: Original strand, 2107424 - 2108096
Alignment:
| Q |
18 |
cctagtatatcagaactctgcactgacttgcatccaaagttgctttaaaaccaaaaatcatctttgctttgtgtttagttttctgcatcagtagnnnnnn |
117 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||| ||||| ||||||||| ||| ||| |
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| T |
2107424 |
cctaatatatcagaactctgcactgacttgcagccaaagtttctttaaaaccaaaaagcctctttgctttttgtttggttttctgcttcaatagataaat |
2107523 |
T |
|
| Q |
118 |
ntttcatttagataattttttgggagaaatattttgaacaatctattaacttgtctta-atctgtatttaattgatcttaaac--tttatgtagatggtc |
214 |
Q |
| |
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|| ||||||||||||| ||| |||||||||||||||||||||||| || |||||||||| ||||||||| ||| |||||| |||| |
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| T |
2107524 |
-ttccatttagataattcttt-------------tgaacaatctattaacttgtcttacatatgtatttaatcgatcttaaaacttttttgtagacggtc |
2107609 |
T |
|
| Q |
215 |
aagttcaagaagatcgcatgaattaacgatcatctgacagcatgccactgtcaaaaactattggcaactatgttacatttctgtctagcaactagtaagt |
314 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
2107610 |
aagttcaagaagattgcatgaattaacgatcatccgacggcatgccactgtcaaaaactattggcaactatgttacatttatgtctagcaa-------gt |
2107702 |
T |
|
| Q |
315 |
actacagtttagcaaattggtggtttcacatgtgaactggcatgtcaaaggtcaaatgttgtttgtaatattgtaaatttgaacatgcccaatgtgtaga |
414 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2107703 |
acttcagtttagcaaattggtggtttcacatgtgaactggcatgtcaaaggtcaaatattgtttgtaatattgtaaatttgaacatgcctaatgtgtaga |
2107802 |
T |
|
| Q |
415 |
tgcccaccattagcagtttagggacttaaaa-----tttctgtcatgttgtttggatct--tatgtgcccatttc--aatttctattttctatgttcatc |
505 |
Q |
| |
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||||||| ||||||||||||||||||||||| | || |||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||| |
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| T |
2107803 |
tgcccactattagcagtttagggacttaaaaaatgttgtcatgcatgttgtttggatcttatatatgcacatttctaaatttctattttctatgttcatc |
2107902 |
T |
|
| Q |
506 |
tgaaaaattctttgctgtgtgataatcactatgaat---ggtgatagatg----ttatgaccccaaaaagaagcttcattttgatacattatat------ |
592 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2107903 |
tgaaaaacactttgatgtgtgataatcactatgaatgaaggtgatagatgttatttatgaccccaaaaagaagcttcattttgatacattatattcttca |
2108002 |
T |
|
| Q |
593 |
-tcttcctaatatttttactaaaattttagggaattagtagaacatagaatacaatttgtctaaagaagtattaggaaacttgattttgaaaac |
685 |
Q |
| |
|
|||||||| |||||||||||||| | || || ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2108003 |
atcttcctagtatttttactaaaaatgtaagggatttgtagaacatacaatgcaatttgtctaaagaagtattaggaaacttgattttgaaaac |
2108096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 179 - 403
Target Start/End: Original strand, 2089122 - 2089337
Alignment:
| Q |
179 |
tgtatttaattgatcttaaactttatgtagatggtcaagttcaagaagatcgcatgaattaacgatcatctgacagcatgccactgtcaaaaactattgg |
278 |
Q |
| |
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|||| ||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| |
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| T |
2089122 |
tgtagttaatggatcttaaactttttgtagatggtcaagttgaagaagatcgcatgaattaatgttcatatgacagcatgccactgtcaaaaactattgg |
2089221 |
T |
|
| Q |
279 |
caactatgttacatttctgtctagcaactagtaagtactacagtttagcaaattggtggtttcacatgtgaactggcatgtcaaaggtcaaatgttgttt |
378 |
Q |
| |
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||||||||||| |||||||||| ||| || ||| ||||||| ||| ||||||| | |||||| | |||||||||||||||||| |||||| |
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| T |
2089222 |
caactatgttatctttctgtctaacaagta---------acaatttagcacattagtggttttatatgtgaccatgcatgtcaaaggtcaaatattgttt |
2089312 |
T |
|
| Q |
379 |
gtaatattgtaaatttgaacatgcc |
403 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
2089313 |
gtaatattgtaaatttgaacatgcc |
2089337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 2103373 - 2103426
Alignment:
| Q |
242 |
gatcatctgacagcatgccactgtcaaaaactattggcaactatgttacatttct |
296 |
Q |
| |
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|||||| |||||||||||||||||| |||| |||||||||||||||||| ||||| |
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| T |
2103373 |
gatcatgtgacagcatgccactgtc-aaaattattggcaactatgttacttttct |
2103426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 491 - 539
Target Start/End: Original strand, 2089374 - 2089422
Alignment:
| Q |
491 |
ttttctatgttcatctgaaaaattctttgctgtgtgataatcactatga |
539 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||| ||||| |||| |
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|
| T |
2089374 |
ttttctatgttcatctgaaaaactctttgctatgtgatgatcaccatga |
2089422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 263 - 297
Target Start/End: Original strand, 2063389 - 2063423
Alignment:
| Q |
263 |
tgtcaaaaactattggcaactatgttacatttctg |
297 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
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|
| T |
2063389 |
tgtcaaaaactaatggcaactatgttacatttctg |
2063423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 39182217 - 39182168
Alignment:
| Q |
354 |
gcatgtcaaaggtcaaatgttgtttgtaatattgtaaatttgaacatgcc |
403 |
Q |
| |
|
|||||||||| |||||||||||||| ||| |||| |||||||||||||| |
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| T |
39182217 |
gcatgtcaaaagtcaaatgttgtttacaattttgtcaatttgaacatgcc |
39182168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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