View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3283_low_40 (Length: 227)
Name: NF3283_low_40
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_low_40 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 45075029 - 45075253
Alignment:
| Q |
1 |
attctaacagccgattctgtgttgattgccgtgacgtcttcaactctaacatcttggattccacctgacatttcactgcctaatgcaaccattgcacttt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45075029 |
attctaacagccgattctgtcttgattgccgtgacgtcttcaactctaacatcttggattccacctgacatttcactgcctaatgcaaccattgcacttt |
45075128 |
T |
|
| Q |
101 |
taggggatatacatgttagccttcttatgattatttgttgagatggctttccaaatttgattccatactcatcccatccactttttattgcaatacaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45075129 |
taggggatatacatgttagccttcttatgattatttgttgagatggctttccaaatttgattccatactcatcccatccactttttattgcaatacaatc |
45075228 |
T |
|
| Q |
201 |
atcaccagaaactatgtagttgtct |
225 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
45075229 |
atcaccagaaactatatagttgtct |
45075253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 45082558 - 45082779
Alignment:
| Q |
4 |
ctaacagccgattctgtgttgattgccgtgacgtcttcaactctaacatcttggattccacctgacatttcactgcctaatgcaaccattgcacttttag |
103 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45082558 |
ctaacagctgattctgtattgattgccgtgacgtcttcaattcttacatcttggattccacctgacatttcactgcctaatgcaaccaaagcacttttag |
45082657 |
T |
|
| Q |
104 |
gggatatacatgttagccttcttatgattatttgttgagatggctttccaaatttgattccatactcatcccatccactttttattgcaatacaatcatc |
203 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | ||| |||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45082658 |
gggatatacatgttagccttcttacgattatattttgtgatggcttgccaactttgattccatactcatcccatccacttttaattgcaatacaatcatc |
45082757 |
T |
|
| Q |
204 |
accagaaactatgtagttgtct |
225 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
45082758 |
accagaaacaatgtagttgtct |
45082779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 45067469 - 45067693
Alignment:
| Q |
1 |
attctaacagccgattctgtgttgattgccgtgacgtcttcaactctaacatcttggattccacctgacatttcactgcctaatgcaaccattgcacttt |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45067469 |
attctaacagctgattctgtgttgattgctgtgatgtcttcaattctaatatcttggattccacctgacatttcactgcctaatgcaaccatcgcacttt |
45067568 |
T |
|
| Q |
101 |
taggggatatacatgttagccttcttatgattatttgttgagatggctttccaaatttgattccatactcatcccatccactttttattgcaatacaatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| | ||| ||||||||||||| ||||||||||||| ||||| |||||||||| || ||||||||||| |
|
|
| T |
45067569 |
taggggatatacatgttagccttcttacgattatcttttgtgatggctttccaactttgattccatacccatccaatccacttttaatcgcaatacaatc |
45067668 |
T |
|
| Q |
201 |
atcaccagaaactatgtagttgtct |
225 |
Q |
| |
|
||||||||| || |||||||||||| |
|
|
| T |
45067669 |
atcaccagagacaatgtagttgtct |
45067693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 45078259 - 45078483
Alignment:
| Q |
1 |
attctaacagccgattctgtgttgattgccgtgacgtcttcaactctaacatcttggattccacctgacatttcactgcctaatgcaaccattgcacttt |
100 |
Q |
| |
|
||||||| ||| ||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
45078259 |
attctaatagcggattctgtgttgattgctgtgacatcttcaattctaacatcttggattccacctgacatttcactgcctaatgcaaccatagcactat |
45078358 |
T |
|
| Q |
101 |
taggggatatacatgttagccttcttatgattatttgttgagatggctttccaaatttgattccatactcatcccatccactttttattgcaatacaatc |
200 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| |||||| |||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45078359 |
caggggatatacaagttaaccttcttatgattatttgttgtgatggcattccaactttaattccatactcatcccatccactttttattgcaatgcaatc |
45078458 |
T |
|
| Q |
201 |
atcaccagaaactatgtagttgtct |
225 |
Q |
| |
|
||| ||||| || ||| |||||||| |
|
|
| T |
45078459 |
atcgccagagacaatgaagttgtct |
45078483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 34504804 - 34505028
Alignment:
| Q |
1 |
attctaacagccgattctgtgttgattgccgtgacgtcttcaactctaacatcttggattccacctgacatttcactgcctaatgcaaccattgcacttt |
100 |
Q |
| |
|
||||||||||| |||||||| ||||| || || |||||||||||||| |||| || ||||||||| ||||||||||| ||||| |||| ||| ||||| | |
|
|
| T |
34504804 |
attctaacagctgattctgtattgatagcagttacgtcttcaactcttacattttcgattccacccgacatttcactccctaaagcaatcatagcactat |
34504903 |
T |
|
| Q |
101 |
taggggatatacatgttagccttcttatgattatttgttgagatggctttccaaatttgattccatactcatcccatccactttttattgcaatacaatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| | |||||||||||||||||| ||||||||||| |
|
|
| T |
34504904 |
ctggggatatacatgttagccttcttatgattatttgttttgatggctttccgaatttaattccatattgatcccatccactttttatcgcaatacaatc |
34505003 |
T |
|
| Q |
201 |
atcaccagaaactatgtagttgtct |
225 |
Q |
| |
|
||||||||| || |||||||||||| |
|
|
| T |
34505004 |
atcaccagagacaatgtagttgtct |
34505028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 29765335 - 29765267
Alignment:
| Q |
151 |
ccaaatttgattccatactcatcccatccactttttattgcaatacaatcatcaccagaaactatgtag |
219 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || | |||| ||| ||||| ||||||||||||||| |
|
|
| T |
29765335 |
ccaaatttgatgccatactcatcccatccactcttcacagcaacacagtcatccccagaaactatgtag |
29765267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 17584507 - 17584721
Alignment:
| Q |
1 |
attctaacagccgattctgtgttgattgccgtgacgtcttcaactctaacatcttggattccacctgacatttcactgcctaatgcaaccattgcacttt |
100 |
Q |
| |
|
||||||| ||| |||| ||| || ||||| |||| ||||||| ||||| ||||||||||||||| |||||||||||||||||||||| ||| ||||| | |
|
|
| T |
17584507 |
attctaatagctgattatgtattcattgctgtgagatcttcaattctaatatcttggattccaccagacatttcactgcctaatgcaatcatagcactat |
17584606 |
T |
|
| Q |
101 |
taggggatatacatgttagccttcttatgattatttgttgagatggctttccaaatttgattccatactcatcccatccactttttattgcaatacaatc |
200 |
Q |
| |
|
||| |||| |||| | |||||| | || ||||| ||||| |||| ||||||||| ||||||||| |||| ||| ||||||||||| |||| |||||| |
|
|
| T |
17584607 |
caggtgatacacatttaagccttgtaattattatgtgttggcttggcattccaaattggattccatattcattccaaccactttttatagcaacacaatc |
17584706 |
T |
|
| Q |
201 |
atcaccagaaactat |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
17584707 |
atcaccagaaactat |
17584721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 11061975 - 11062043
Alignment:
| Q |
151 |
ccaaatttgattccatactcatcccatccactttttattgcaatacaatcatcaccagaaactatgtag |
219 |
Q |
| |
|
|||||||| || |||||||||||||||||||| || | ||| | ||| ||||| ||||||||||||||| |
|
|
| T |
11061975 |
ccaaattttatgccatactcatcccatccactcttcactgccacacagtcatctccagaaactatgtag |
11062043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University