View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3283_low_5 (Length: 507)
Name: NF3283_low_5
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 677042 - 676771
Alignment:
| Q |
11 |
cagagaaatcacatatatcttgatcatctaagatcatttttatttcaccttattttcttctatttttgtaaaatatctcaatcatctcaagctattctat |
110 |
Q |
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| T |
677042 |
cagagaaatcacatatatcttgatcatctaagatcatttatatttcaccttattttcttctatttttgtaaaatatctcaatcatctcaagctattctat |
676943 |
T |
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| Q |
111 |
tcccatctttcttttggttactctctcttttcactttccctccatattctcttttcttaggacctacactccttgtggactcgtggtcgagactatatca |
210 |
Q |
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| T |
676942 |
tcccatctttcttttggttactctctcttttcactttccctccattttctcttttctaaggacctacactccttgtggactcgtggtcgagactatatca |
676843 |
T |
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| Q |
211 |
tattagcgcaatctcaagcacattt-aaaatgattttagcctaagtaacttctattgaactcaaggacttta |
281 |
Q |
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| T |
676842 |
tattagcgcaatctcaagcacatttaaaaatgattttagcctaagtaacttctattgaactcaaggatttta |
676771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 396 - 490
Target Start/End: Complemental strand, 676598 - 676504
Alignment:
| Q |
396 |
tttagggtaagattaaagaagaaagataatttgttactcaaagaaagaatagatcagaaaaaagccactaaagaatgtcaagagcaatatgtagg |
490 |
Q |
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| T |
676598 |
tttagggtaagattaaagaagaaagataatttgttactcaaagaaagaatagatcagaaaaaagccactaaagaatgtcaagagcaatatgtagg |
676504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 322
Target Start/End: Complemental strand, 676649 - 676605
Alignment:
| Q |
278 |
tttatttacatactaagattttgtccatcacaaaaacaaatcaac |
322 |
Q |
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| T |
676649 |
tttatttacatactaagattttgtccatcacaaaaacaaatcaac |
676605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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