View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3283_low_8 (Length: 405)
Name: NF3283_low_8
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 8 - 395
Target Start/End: Original strand, 17435008 - 17435395
Alignment:
| Q |
8 |
gaaatcattaaccactttatctcaatcacttttttggcattcaaaataaactgaaaaccgaaggacaataccgattcatcataacaatgtgcacaatcat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17435008 |
gaaatcattaaccactttatctcaatcacttttttggcattcaaaataaactgaaaaccgaaggacaataccgattcatcataacaatgtgcacaatcat |
17435107 |
T |
|
| Q |
108 |
gctcacatgctctttcttacatacatgtaacaagaataatatgttgaaaacaaatgaaacacctttcttgctggttagatttcttgctagttatgcatct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17435108 |
gctcacatgctctttcttacatacatgtaacaagaataatatgttgaggccaaatgaaacacctttcttgctggttagatttcttgctagttatgcatct |
17435207 |
T |
|
| Q |
208 |
tacgtttgcatcaggtcggtgaataaagcaataacgtattctcatgtcacgattgtatagcacaaattgtaatggaggctgacatggtatatgcatgcct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17435208 |
tacgtttgcatcaggtcggtgaataaagcaataacgtattctcatgtcacgattgtatagcacaaattgtaatggaggctgacatggtatatgcatgcct |
17435307 |
T |
|
| Q |
308 |
atgaaagccaactcttaatgcttgttatacgtctaacgttttgattatcatccacgttaatttcactatactaactttacaccctttg |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17435308 |
atgaaagccaactcttaatgcttgttatacgtctaacgttttgattatcatccacgttaatttcactatactaactttacaccatttg |
17435395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 305
Target Start/End: Original strand, 17430343 - 17430424
Alignment:
| Q |
222 |
gtcggtgaataaagcaataacgtattctcatgtcacgattgtatagcacaaattgtaatggaggctgacatggtatatgcatgc |
305 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| | |||| |||||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
17430343 |
gtcggtgaataaagcaataacgtatt-tcctgttatgatttcatagcacaaattgtaatggaagctggcat-atatatgcatgc |
17430424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University