View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3283_low_9 (Length: 404)
Name: NF3283_low_9
Description: NF3283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3283_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 8076750 - 8077128
Alignment:
| Q |
1 |
tgattatagctattatgtcaggaaaacctaacacaatggtttctgggacacgcaatcttttagagtcaaacatacctcagcttccaaaacttgatcttac |
100 |
Q |
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| T |
8076750 |
tgattatagctattatgtcaggaaaacctaacacaatggtttctgggacacacaatcttttagagacaaacatacctcagcttccaaaacttgattttcc |
8076849 |
T |
|
| Q |
101 |
acctctagcaaagcatgaacttcttaaggtttctgaattaccaaagtcagaaatatctgaatcgtcaaaaccggagttccctaaagtatctgagttgtct |
200 |
Q |
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| T |
8076850 |
acctctagcaaagcatgaacttcttaaggtttctgaattaccaaagtcagaaatacctgaatcatcaaaaccgaagttccctaaagtatttgagttgtct |
8076949 |
T |
|
| Q |
201 |
gctccagaaaatctagagttatctgaatttaaaaagtacgagctacttgaaatccatgatatcccacaactacctcctcttgaaattattattcaacttc |
300 |
Q |
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| T |
8076950 |
gctccagaaattccagagttatctaaatttgaaaagtacgagctacttgaa---------atcccacaactacctcctctcgaaattattattcaacctc |
8077040 |
T |
|
| Q |
301 |
ctaactttactatcattatacctagacctattttacgtaatcgtccataaattcaaacgtagttttctactatatatggccatattgt |
388 |
Q |
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| T |
8077041 |
ctgactttgctatcattatacctggacctattttacgtaatcgtccataaattcaaacgtagttttctactatatatggccatattgt |
8077128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 8095867 - 8095784
Alignment:
| Q |
29 |
taacacaatggtttctgggacacgcaatcttttagagtcaaacatacctcagcttccaaaacttgatcttacacctctagcaaa |
112 |
Q |
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| T |
8095867 |
taacacaagggttgccggggcacgaaatcttctagagtcaaacatacctcagtttccaaaacttgattttccacctctaccaaa |
8095784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 8112040 - 8111957
Alignment:
| Q |
29 |
taacacaatggtttctgggacacgcaatcttttagagtcaaacatacctcagcttccaaaacttgatcttacacctctagcaaa |
112 |
Q |
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| T |
8112040 |
taacacaagggttgccggggcacgaaatcttctagagtcaaacatacctcagtttccaaaacttgattttccacctctaccaaa |
8111957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 8040841 - 8040944
Alignment:
| Q |
49 |
cacgcaatcttttagagtcaaacatacctcagcttccaaaacttgatcttacacctctagcaaagcatgaacttcttaaggtttctgaattaccaaagtc |
148 |
Q |
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| T |
8040841 |
cacgcaatcttctagagtcgaacatacctgaggttccaaaacttgattttccacctataccaaagcccgagcttcctaagattcctgaattacctaagcc |
8040940 |
T |
|
| Q |
149 |
agaa |
152 |
Q |
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|||| |
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| T |
8040941 |
agaa |
8040944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 8071767 - 8071890
Alignment:
| Q |
29 |
taacacaatggtttctgggacacgcaatcttttagagtcaaacatacctcagcttccaaaacttgatcttacacctctagcaaagcatgaacttcttaag |
128 |
Q |
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||||||||||||| ||| ||||||||||| ||||||| ||||||||| || |||| ||||||||| || ||||| || |||||| ||| |||| | | |
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| T |
8071767 |
taacacaatggttctcggggcacgcaatcttctagagtcgaacatacctgaggttccgaaacttgattttccacctataccaaagcctgagcttccaacg |
8071866 |
T |
|
| Q |
129 |
gtttctgaattaccaaagtcagaa |
152 |
Q |
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|| |||||||||| ||| ||||| |
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| T |
8071867 |
attcctgaattacctaagccagaa |
8071890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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