View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3284_high_2 (Length: 378)
Name: NF3284_high_2
Description: NF3284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3284_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 48278937 - 48279190
Alignment:
| Q |
20 |
cttttaattaattgcgtctaacatatctgatgtatgttgatgtctgacaccaacacatttgattatgttcaataaatttattgatgtgtcattattatgt |
119 |
Q |
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|||||||| ||| |||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | ||| |
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| T |
48278937 |
cttttaatgaatggcgtgtaacatatcggatgtatgttgatgtctgacacctacacatttgattatgttcaataaatttatttatgtgtcattactgtgt |
48279036 |
T |
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| Q |
120 |
ctggtatcgatgtgtgtgtatgtgtatgtgcttcataagtgtagactatgttttctattggggaacctaaaagcgtaaca-tatgacaacccttcatcat |
218 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| |
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| T |
48279037 |
ctggtatcgatgt------atgtgtatgtgcttcataagtgtagactatgttttctattgggaaacctaaaagcgcaacaatatgacaacccttcatcat |
48279130 |
T |
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| Q |
219 |
gatcattcttttccacgcggaacggttggtactccatttctttcgtttgattctgatccc |
278 |
Q |
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| T |
48279131 |
gatcattcttttccacgcggaacggttagtactccatttctttcgttttattttgatccc |
48279190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 48279244 - 48279284
Alignment:
| Q |
332 |
tagtctctgaattttttagagaattgttaacatattcttcga |
373 |
Q |
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| T |
48279244 |
tagtctct-aattttttagagaattgttaacatatttttcga |
48279284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 9e-89; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 29632848 - 29633102
Alignment:
| Q |
20 |
cttttaattaattgcgtctaacatatctgatgtatgttgatgtctgacaccaacacatttgattatgttcaataaatttattgatgtgtcattattatgt |
119 |
Q |
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| T |
29632848 |
cttttaatgaatggcgtgtaacatatatgatgtatgttgatgtctgacacctacacatttgattatgttcaataaatttatttatgtgtcattattgtgt |
29632947 |
T |
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| Q |
120 |
ctggtatcgatgtgtgtgtatgtgtatgtgctt-cataagtgtagactatgttttctattggggaacctaaaagcgtaaca-tatgacaacccttcatca |
217 |
Q |
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| T |
29632948 |
atggtatcg------gtgtatgtgtatgtgctttcataagtgtagactatgttttctgttggggaacctaaaagcgcaacaatatgacaacccttcacca |
29633041 |
T |
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| Q |
218 |
tgatcattcttttccacgcggaacggttggtactccatttctttcgtttgattctgatccc |
278 |
Q |
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| T |
29633042 |
tgatcattcttttccacgcggaacggttagtactccatttctttcgttttattctaatccc |
29633102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 21 - 278
Target Start/End: Original strand, 40388441 - 40388691
Alignment:
| Q |
21 |
ttttaattaattgcgtctaacatatctgatgtatgttgatgtctgacaccaacacatttgattatgttcaataaatttattgatgtgtcattattatgtc |
120 |
Q |
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| T |
40388441 |
ttttaatgaatggcgtgtaacatatcggatgtatgttgatgtctgacacctacacatttgattatgttcaataaatttatt--tgtgtcattattgtgtc |
40388538 |
T |
|
| Q |
121 |
tggtatcgatgtgtgtgtatgtgtatgtgcttcataagtgtagactatgttttctattggggaacctaaaagcgtaac-atatgacaacccttcatcatg |
219 |
Q |
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| T |
40388539 |
tcgtatc------tgtgtatatgtatgtgcttcataagtgtagactatgtttcctattggggaacctaaaagcgcaacaatatgacaacccttcaccatg |
40388632 |
T |
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| Q |
220 |
atcattcttttccacgcggaacggttggtactccatttctttcgtttgattctgatccc |
278 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
40388633 |
atcattcttttccacacggaacggttagtactccatttctttcgttttattctgatccc |
40388691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 29633156 - 29633197
Alignment:
| Q |
332 |
tagtctctgaattttttagagaattgttaacatattcttcga |
373 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29633156 |
tagtctctgaattttttagagaattgttaacatatttttcga |
29633197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 40388745 - 40388786
Alignment:
| Q |
332 |
tagtctctgaattttttagagaattgttaacatattcttcga |
373 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
40388745 |
tagtctctgaattttttagagaatggttaacatatttttcga |
40388786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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