View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3284_high_3 (Length: 278)
Name: NF3284_high_3
Description: NF3284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3284_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 30552114 - 30551883
Alignment:
| Q |
10 |
gcacagatcacaatcaaaggccttttcaagcttaatttactatccaactactattacatagctttattatcacaacatgtttttgttatactaaactatt |
109 |
Q |
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| T |
30552114 |
gcacagatcacaatcaaaggccttttcaagcttaatttactatccaactactattacatagctttattat-------------------acaaaactatt |
30552034 |
T |
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| Q |
110 |
ttcgtttatgtatcgtaaaagaaaaacataccttgtaaaacaataactttagctgttccacgttatcgatttgtttgagaagattatgtgcttgaaatcc |
209 |
Q |
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| T |
30552033 |
ttcgtttatgtatcgtaaaagaaaaacataccttgtaaaacaataactttagctgttccacgttatcgatttgtttgagaagattatgtgcttgaaatcc |
30551934 |
T |
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| Q |
210 |
aagtttttcccttctatcctttttatcttcatcaagaacaatcacaacaga |
260 |
Q |
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| T |
30551933 |
aagtttttccattctatcctttttatcttcatcaagaacaatcacaacaga |
30551883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 125 - 260
Target Start/End: Complemental strand, 30560686 - 30560551
Alignment:
| Q |
125 |
taaaagaaaaacataccttgtaaaacaataactttagctgttccacgttatcgatttgtttgagaagattatgtgcttgaaatccaagtttttcccttct |
224 |
Q |
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|||||||||| |||||||||||||||||||| || || ||||||| | |||||||||| | | |||||||| ||||||||| ||||||| |||| |||| |
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| T |
30560686 |
taaaagaaaagcataccttgtaaaacaataatttcagtcgttccacttcatcgatttgtcttaaaagattatatgcttgaaaaccaagttcttccattct |
30560587 |
T |
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| Q |
225 |
atcctttttatcttcatcaagaacaatcacaacaga |
260 |
Q |
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| T |
30560586 |
gttctttttatcttcatcaacaacaatcacaacaga |
30560551 |
T |
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