View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3284_low_1 (Length: 514)
Name: NF3284_low_1
Description: NF3284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3284_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Complemental strand, 12185577 - 12185082
Alignment:
| Q |
1 |
cttaaggtatgttagggaaaattgcttgttattaaaaatagatggtggattaattgcttctcactttttcaaatttttcaataacacattaataattgaa |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12185577 |
cttaaggtatcttagggaaaattgcttgttattaaaaatagatagtggattaattacttcgcactttttcaaatttttcaataacacattaataattgaa |
12185478 |
T |
|
| Q |
101 |
atcactaacttgaaattatgtttgaaaatttgaacagggatgtacttgaaaaactcttgcatattggatttcacggagacctcatgttataaagttctgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
12185477 |
atcactaacttgaaattatgtttgaaaatttgaacaggggtgtacttgaagaactcttgcatattggatttggcggagacctcatgttataaaattctgt |
12185378 |
T |
|
| Q |
201 |
tgcagcttatgtaaagagatggagtcaataattgaaccgattgaactagttgaatcatgacttagatgtctcatcgattcaatttctggtcaatttttct |
300 |
Q |
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||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
12185377 |
tgcagcttatgtaaagacatgcaggcaataattgaaccgattgaactagttgaatcatgacttagatgtctcatcgattcaatttctagtcggtttttct |
12185278 |
T |
|
| Q |
301 |
ttttctaatatt-taagcaattgttaggcttatgtcatctctataagttggtttcagcttatgttcttcagctctctataatagcttatgaaaagaatgt |
399 |
Q |
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| T |
12185277 |
ttttctaatgttataagcaattgttaggcttatgtcatctctataagttggtttcagcttatgttcttcagctctcaataatagcttatgaaaagaatgt |
12185178 |
T |
|
| Q |
400 |
aaatgtgagctttcgattgtaactggtgttgttcacgtcactaatggctttcgtttgttcaattgtattcattatctgtttgcattttcgtggatc |
495 |
Q |
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| T |
12185177 |
aaatgtgagctttggattgtaactggtgctgttcacgtcacttatggctttcgtttgttcaattgtattcattatctgtttccattttcgtggatc |
12185082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Complemental strand, 12430005 - 12429510
Alignment:
| Q |
1 |
cttaaggtatgttagggaaaattgcttgttattaaaaatagatggtggattaattgcttctcactttttcaaatttttcaataacacattaataattgaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12430005 |
cttaaggtatcttagggaaaattgcttgttattaaaaatagatagtggattaattacttcgcactttttcaaatttttcaataacacattaataattgaa |
12429906 |
T |
|
| Q |
101 |
atcactaacttgaaattatgtttgaaaatttgaacagggatgtacttgaaaaactcttgcatattggatttcacggagacctcatgttataaagttctgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
12429905 |
atcactaacttgaaattatgtttgaaaatttgaacaggggtgtacttgaagaactcttgcatattggatttggcggagacctcatgttataaaattctgt |
12429806 |
T |
|
| Q |
201 |
tgcagcttatgtaaagagatggagtcaataattgaaccgattgaactagttgaatcatgacttagatgtctcatcgattcaatttctggtcaatttttct |
300 |
Q |
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|
||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
12429805 |
tgcagcttatgtaaagacatgcaggcaataattgaaccgattgaactagttgaatcatgacttagatgtctcatcgattcaatttctagtcggtttttct |
12429706 |
T |
|
| Q |
301 |
ttttctaatatt-taagcaattgttaggcttatgtcatctctataagttggtttcagcttatgttcttcagctctctataatagcttatgaaaagaatgt |
399 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12429705 |
ttttctaatgttataagcaattgttaggcttatgtcatctctataagttggtttcagcttatgttcttcagctctcaataatagcttatgaaaagaatgt |
12429606 |
T |
|
| Q |
400 |
aaatgtgagctttcgattgtaactggtgttgttcacgtcactaatggctttcgtttgttcaattgtattcattatctgtttgcattttcgtggatc |
495 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12429605 |
aaatgtgagctttggattgtaactggtgctgttcacgtcacttatggctttcgtttgttcaattgtattcattatctgtttccattttcgtggatc |
12429510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 97 - 237
Target Start/End: Complemental strand, 12174017 - 12173877
Alignment:
| Q |
97 |
tgaaatcactaacttgaaattatgtttgaaaatttgaacagggatgtacttgaaaaactcttgcatattggatttcacggagacctcatgttataaagtt |
196 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| || |
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| T |
12174017 |
tgaaatcactaagttaaaattatgtttgaaaatttgaacaggagtgtacttgaagaactcttgcatattggatttggcggagacctcatgttataaaatt |
12173918 |
T |
|
| Q |
197 |
ctgttgcagcttatgtaaagagatggagtcaataattgaac |
237 |
Q |
| |
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||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
12173917 |
ctgttgcagcttatgtaaagacatgcagtcaataattgaac |
12173877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 97 - 237
Target Start/End: Complemental strand, 12418445 - 12418305
Alignment:
| Q |
97 |
tgaaatcactaacttgaaattatgtttgaaaatttgaacagggatgtacttgaaaaactcttgcatattggatttcacggagacctcatgttataaagtt |
196 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| || |
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| T |
12418445 |
tgaaatcactaagttaaaattatgtttgaaaatttgaacaggagtgtacttgaagaactcttgcatattggatttggcggagacctcatgttataaaatt |
12418346 |
T |
|
| Q |
197 |
ctgttgcagcttatgtaaagagatggagtcaataattgaac |
237 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
12418345 |
ctgttgcagcttatgtaaagacatgcagtcaataattgaac |
12418305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 483
Target Start/End: Complemental strand, 5554289 - 5554197
Alignment:
| Q |
391 |
aaagaatgtaaatgtgagctttcgattgtaactggtgttgttcacgtcactaatggctttcgtttgttcaattgtattcattatctgtttgca |
483 |
Q |
| |
|
|||||||||||| || |||||| ||| |||||||||||||||||||||| ||||| |||| ||||||||| || || ||||||||| ||||| |
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|
| T |
5554289 |
aaagaatgtaaacgtaagctttggatcgtaactggtgttgttcacgtcagtaatgacttttatttgttcaactgcatccattatctgcttgca |
5554197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 483
Target Start/End: Original strand, 5604558 - 5604650
Alignment:
| Q |
391 |
aaagaatgtaaatgtgagctttcgattgtaactggtgttgttcacgtcactaatggctttcgtttgttcaattgtattcattatctgtttgca |
483 |
Q |
| |
|
||||||||||||||| |||||| || ||||||| ||| ||||| | |||||||||||||| |||||||||| || || ||||||||| ||||| |
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|
| T |
5604558 |
aaagaatgtaaatgtaagctttggagtgtaactcgtgctgttcccatcactaatggcttttgtttgttcaactgcatccattatctgcttgca |
5604650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 483
Target Start/End: Complemental strand, 5630812 - 5630720
Alignment:
| Q |
391 |
aaagaatgtaaatgtgagctttcgattgtaactggtgttgttcacgtcactaatggctttcgtttgttcaattgtattcattatctgtttgca |
483 |
Q |
| |
|
||||||||||||||| |||||| || ||||||| ||| ||||| | |||||||||||||| |||||||||| || || ||||||||| ||||| |
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|
| T |
5630812 |
aaagaatgtaaatgtaagctttggagtgtaactcgtgctgttcccatcactaatggcttttgtttgttcaactgcatccattatctgcttgca |
5630720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 483
Target Start/End: Complemental strand, 5648305 - 5648213
Alignment:
| Q |
391 |
aaagaatgtaaatgtgagctttcgattgtaactggtgttgttcacgtcactaatggctttcgtttgttcaattgtattcattatctgtttgca |
483 |
Q |
| |
|
||||||||||||||| |||||| ||||||| ||||| | ||| ||||| |||||||||| ||||||| | ||||| ||||||||| ||||| |
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|
| T |
5648305 |
aaagaatgtaaatgtaagctttgaattgtaaatggtgctattcgcgtcagtaatggcttttgtttgttggactgtatccattatctgcttgca |
5648213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 13168017 - 13167973
Alignment:
| Q |
391 |
aaagaatgtaaatgtgagctttcgattgtaactggtgttgttcac |
435 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
13168017 |
aaagaatctaaatgtaagctttggattgtaactagtgttgttcac |
13167973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 393
Target Start/End: Original strand, 10199418 - 10199469
Alignment:
| Q |
342 |
ataagttggtttcagcttatgttcttcagctctctataatagcttatgaaaa |
393 |
Q |
| |
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|||||||| ||||||||||| ||| | ||||||||| ||||||||||||||| |
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|
| T |
10199418 |
ataagttgttttcagcttattttcataagctctctaaaatagcttatgaaaa |
10199469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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