View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3284_low_7 (Length: 236)
Name: NF3284_low_7
Description: NF3284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3284_low_7 |
 | |
|
| [»] scaffold0516 (1 HSPs) |
| | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 8150503 - 8150696
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
8150503 |
tatgaataattttaaaatgtaacccctcaatattaataaaattgattataatgcattcattgtgtaactcgcataaagtgaagtaaatggagtgtttttg |
8150602 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcaataaatatgagagattagt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||| |
|
|
| T |
8150603 |
caactgatgggaaatgaaagatagatagtaagaaatggctagtaaagaatcaagaacaaaagtgagtcacatggc-ataagtatgagagattagt |
8150696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 10186484 - 10186309
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | |||||||| |
|
|
| T |
10186484 |
tatgaacaattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcaagaagtgaggtaaatgaaatgtttttg |
10186385 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggca |
176 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
10186384 |
caactgataggaaatgaaagatagatagtaaggaatgactagtaaagaatcaagaacaaaagagagtcacttggca |
10186309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 20172088 - 20171915
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| |||||| |
|
|
| T |
20172088 |
tatgaataattttaaaatgaaacccctcactattaataaaatggattataatacattcattgtgtaacttccatgaagtgaagtaaatagagagtttttc |
20171989 |
T |
|
| Q |
101 |
caactgatgggaaatgaaaga-tagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatg |
173 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20171988 |
caattgatgggaaatgaaagattagatagtaagaaatgactagtaaagaatcaagaacaaaagagagccacatg |
20171915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 4138454 - 4138254
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||| |||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |
|
|
| T |
4138454 |
tatgaacaattttaaaacgtaacccctcaatattaataaaatagattataatgcattcattgtgtaacttgcaagaagtgaagtaaatgaaatgtttttg |
4138355 |
T |
|
| Q |
101 |
caactgatgggaaatgaa-------agatagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcaataaatatgagagatta |
193 |
Q |
| |
|
|||| ||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| |
|
|
| T |
4138354 |
caacggataggaaatgaaagatgaaagatagatagtagagaatggctagtaaagaatcaagaacaaaagagagccacttggc-ataagtatgagagatta |
4138256 |
T |
|
| Q |
194 |
gt |
195 |
Q |
| |
|
|| |
|
|
| T |
4138255 |
gt |
4138254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 11428184 - 11428305
Alignment:
| Q |
56 |
ttcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgcaactgatgggaaatgaaagat-agatagtaaggaatggctagtaaagaatcaag |
154 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||| ||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11428184 |
ttcattgtgtaacttccatgaagtgaagtaaatggatagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaag |
11428283 |
T |
|
| Q |
155 |
aacaaaagagagccacatggca |
176 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
11428284 |
aacaaaagagagccacaaggca |
11428305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 918967 - 919018
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataat |
52 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
918967 |
tatgaataattttaaaatgtaacccctcaatattaataaaatggattataat |
919018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 47233834 - 47234027
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47233834 |
tatgaataattttaaaatgtaaccccttaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatgaagtgtttttg |
47233933 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcaataaatatgagagattagt |
195 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | |||| |||||||||||||| |
|
|
| T |
47233934 |
caactgatggaaaatgaaagatagatagtaaggaatgactagtaaagaatcaagaacaaaagatagccacatgac-ataagtatgagagattagt |
47234027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 44393798 - 44393625
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| |||||| |
|
|
| T |
44393798 |
tatgaataattttaaaatgaaacccctcactattaataaaatggattataatacattcattgtgtaacttccatgaagtgaagtaaatagagagtttttc |
44393699 |
T |
|
| Q |
101 |
caactgatgggaaatgaaaga-tagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatg |
173 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44393698 |
caattgatgggaaatgaaagattagatagtaagaaatgactagtaaagaatcaagaacaaaagagagccacatg |
44393625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 25419587 - 25419717
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25419587 |
tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttg |
25419686 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaa |
131 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
25419687 |
taactgatggaaaatgaaagatagatagtaa |
25419717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 39066882 - 39067012
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39066882 |
tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttg |
39066981 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaa |
131 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
39066982 |
taactgatggaaaatgaaagatagatagtaa |
39067012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 5768076 - 5768206
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5768076 |
tatgaataattttaaaatgtaacccctcaatattaataaaattgattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttg |
5768175 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaa |
131 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
5768176 |
taactgatggaaaatgaaagatagatagtaa |
5768206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 47932975 - 47933033
Alignment:
| Q |
45 |
attataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgcaa |
103 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
47932975 |
attataatgcattcattgtacaacttgcatgaagtgaagtaaatgcagtgcttttgcaa |
47933033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 34737811 - 34738004
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34737811 |
tatgaataattttaaaatgtaacccctcattgttaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtagatggagtgtttttg |
34737910 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcaataaatatgagagattagt |
195 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
34737911 |
caactgatggaaaatgaaagatagattgtacggaatggctagtaaagaatcaagaacaaaagagatccacatggc-ataagtatgagagattagt |
34738004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 21803026 - 21802833
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |
|
|
| T |
21803026 |
tatgaacaattttaaaacgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcaagaagtgaagtaaatgaaatgtttttg |
21802927 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcaataaatatgagagattagt |
195 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||| |
|
|
| T |
21802926 |
caactgataggaaatgaaagatagatagtaatgaatggctagtaaagaatcaagaacaaaagagagccacttggc-ataagtatgagagattagt |
21802833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 53830517 - 53830714
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
53830517 |
tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatagagtgtttttg |
53830616 |
T |
|
| Q |
101 |
caactgatgggaaatgaa----agatagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcaataaatatgagagattagt |
195 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||| |
|
|
| T |
53830617 |
caaccgatggaaaatgaaagatagatagatagtaaggaacggctagtaaagaatcaagaacaaaagatagccacatggc-ataagtatgagagattagt |
53830714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 5430843 - 5430664
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctc---gatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgttt |
97 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
5430843 |
tatgaataattttaaaatgtaacccctcactattattaataaaatggattataatacattcattgtgtaacttccatgaagtgaagtaaatggagagttt |
5430744 |
T |
|
| Q |
98 |
ttgcaactgatgggaaatgaaaga-tagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggca |
176 |
Q |
| |
|
|| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5430743 |
ttccaattgatgggaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggca |
5430664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 2500660 - 2500831
Alignment:
| Q |
5 |
aataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgcaac |
104 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
2500660 |
aataattttaaaatgtaaccgcacaatattaataaaatggattataatgcattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaac |
2500759 |
T |
|
| Q |
105 |
tgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggca |
176 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2500760 |
ggatgggaaatgaaagataaatagtaaggaatgattagtagggaatcaagaacaaaagagagccacatggca |
2500831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 21632781 - 21632975
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttt-t |
99 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| | |||||| | |
|
|
| T |
21632781 |
tatgaacaattttaaaacataacccctcaatattaataaaatggatcataatgcattcatcgtgtaacttgcaagaagtgaagtaaatgaaatgtttttt |
21632880 |
T |
|
| Q |
100 |
gcaactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcaataaatatgagagattagt |
195 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||| |||||||||||||| |
|
|
| T |
21632881 |
gcaactgatagaaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagagcgccacttggc-ataagtatgagagattagt |
21632975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 2505013 - 2505143
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2505013 |
tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttg |
2505112 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaa |
131 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
2505113 |
taactgatggaaaatgaaagatagatagtaa |
2505143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 46092433 - 46092306
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46092433 |
tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggcaagtttttg |
46092334 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatag |
128 |
Q |
| |
|
||| ||||| ||||||||||||||||| |
|
|
| T |
46092333 |
taaccgatggaaaatgaaagatagatag |
46092306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 46134958 - 46134831
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46134958 |
tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggcaagtttttg |
46134859 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatag |
128 |
Q |
| |
|
||| ||||| ||||||||||||||||| |
|
|
| T |
46134858 |
taaccgatggaaaatgaaagatagatag |
46134831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 20036413 - 20036251
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtg-ttttt |
99 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| || |||| ||||| |
|
|
| T |
20036413 |
tatgattaattttaaaatgtaactgctcaatattaataaaatgaattataatgcattcattatgcaacttgcatgaagtgaagtaactgaagtgtttttt |
20036314 |
T |
|
| Q |
100 |
gcaactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaaga |
163 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||| |
|
|
| T |
20036313 |
acatctgatgggaaatgaaagatagatagtaatgaatgactagtaaagaat-aagaacaaaaga |
20036251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 43943520 - 43943462
Alignment:
| Q |
45 |
attataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgcaa |
103 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
43943520 |
attataatgcattcattgtacaacttgcatgaagtgaagtaaatgcagtgcttttgcaa |
43943462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 35870473 - 35870280
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
35870473 |
tatgaataattttaaaatgtaacctctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagttttcg |
35870374 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcaataaatatgagagattagt |
195 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||| |
|
|
| T |
35870373 |
caactgatggaaaatgaaagatagatagtaaggaatgactagtaaagaatcaagaagaaaagatagccacatggc-ataagtatgagagattagt |
35870280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 48266394 - 48266223
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
48266394 |
tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagt-aagtaaatggagagtttttg |
48266296 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatg |
173 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||| |
|
|
| T |
48266295 |
caactgatggaaaatgaaagatagatagtaaggaatgactagtaaagaatcaagaagaaaagatagccacatg |
48266223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 26215415 - 26215221
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
26215415 |
tatgaataattttaaaatgtaacccctcgctattaataaaatggattataacacattcattgtgtaacttccatgaagtgaagtaaatggagagtttttc |
26215316 |
T |
|
| Q |
101 |
caactgatgggaaatgaaaga-tagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcaataaatatgagagattagt |
195 |
Q |
| |
|
||| |||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
26215315 |
caattgatggaaaatgaaagattagatagtaaggaatggctagcaaagaatcaagaacaaaagagagccacatggc-ataagtatgagagattagt |
26215221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 52349852 - 52349726
Alignment:
| Q |
5 |
aataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgcaac |
104 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
52349852 |
aataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttgtaac |
52349753 |
T |
|
| Q |
105 |
tgatgggaaatgaaagatagatagtaa |
131 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
52349752 |
tgatggaaaatgaaagatagatagtaa |
52349726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 5884423 - 5884481
Alignment:
| Q |
45 |
attataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgcaa |
103 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
5884423 |
attataatgcattcattgtacaacttgcatgaagtgaagtaaatgcagtgcttttgcaa |
5884481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 54945777 - 54945835
Alignment:
| Q |
45 |
attataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgcaa |
103 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
54945777 |
attataatgcattcattgtacaacttgcatgaagtgaagtaaatgcagtgcttttgcaa |
54945835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 37302000 - 37302193
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37302000 |
tatgaataattttaaaatgtaaccctccattattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
37302099 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcaataaatatgagagattagt |
195 |
Q |
| |
|
||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||| |
|
|
| T |
37302100 |
caaatgatgggaaatgaaagatagattgtacggaatggctagtaaagaatcaagaacaaaagagatccacatggc-ataagtataagagattagt |
37302193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 21605079 - 21605272
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21605079 |
tatgaataattttaaaatttaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatgaagtgtttttg |
21605178 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcaataaatatgagagattagt |
195 |
Q |
| |
|
|| | |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| | |||| |||||||||||||| |
|
|
| T |
21605179 |
cagccaatggaaaatgaaagatagatagtaaggaatgactaataaagaatcaagaacaaaagatagccacatgac-ataagtatgagagattagt |
21605272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 36991173 - 36991043
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36991173 |
tatgaataattttaaaatgtaacccctcaatattaataaaatagattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttg |
36991074 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaa |
131 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
36991073 |
taactgatggaaaatgaaagatagatagtaa |
36991043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0516 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0516
Description:
Target: scaffold0516; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 3377 - 3184
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
3377 |
tatgaataattttaaaatgtaaccgcttaatattaataaaatggattataattcaatcattgtgcaacttgcatgaagtgaagtaaatgaagtgtttttg |
3278 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcaataaatatgagagattagt |
195 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| |
|
|
| T |
3277 |
caactgatgggaaatgaaagataaatagtaaagaatggctagtaaagaatcaagaacaaaagagagccacatgac-ataagtatgagagattagt |
3184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 41646720 - 41646910
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41646720 |
tatgaataattttaaaatgtaacccctcaatattaataaaatggattaaaatacattcattgtgtaacttgcatgaaatgaagtaaatggagtgtttttg |
41646819 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcaataaatatgagagattagt |
195 |
Q |
| |
|
|||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||| |
|
|
| T |
41646820 |
caaccgatggaaaatgaaagata---agtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggc-ataagtatgagagattagt |
41646910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 7574103 - 7574233
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7574103 |
tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttg |
7574202 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaa |
131 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
7574203 |
taactgatggaaaatgaaagatagatagtaa |
7574233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 16668698 - 16668828
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16668698 |
tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattatgtaacttgcatgaagtgaagtaaatggagagtttttg |
16668797 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaa |
131 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
16668798 |
taactgatggaaaatgaaagatagatagtaa |
16668828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 29455499 - 29455448
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataat |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29455499 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataat |
29455448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 43564289 - 43564238
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataat |
52 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43564289 |
tatgaataattttaaaatgtaacccctcaatattaataaaatggattataat |
43564238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 22912540 - 22912733
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||| |||||| |||| ||||||||||||||||||||||| || |
|
|
| T |
22912540 |
tatgaataattttaaaatgtaactcctc-atattaataaaatggtttataatgcattcattttgtaacatgcaagaagtgaagtaaatggagtgtttctg |
22912638 |
T |
|
| Q |
101 |
caac-tgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcaataaatatgagagattagt |
195 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
22912639 |
caacctgatgggaaatgaaagataaataataaggaatggctagtaaagaatcaagaacaaaagagagccacatggc-ataagtatgagagattagt |
22912733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 13786359 - 13786229
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13786359 |
tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttg |
13786260 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaa |
131 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
13786259 |
taactgatggaaaatgaaagatagatagtaa |
13786229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 23726037 - 23726229
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |||||||||| |
|
|
| T |
23726037 |
tatgaataattt-aaaatgtaaccgtttaatattaataaaatggattataattcattcattgtgcaacttgcatgaaatgaagtaaatgaagtgtttttg |
23726135 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcaataaatatgagagattagt |
195 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| || | |||| |||||||||||||| |
|
|
| T |
23726136 |
caacagatgaaaaatgaaagatagatagtaaagaatgaccagtaaagaatcaagaacaaaagagagccatataac-ataagtatgagagattagt |
23726229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 25807784 - 25807914
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25807784 |
tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggaaagtttttg |
25807883 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaa |
131 |
Q |
| |
|
|| |||||| |||||||||||||||||||| |
|
|
| T |
25807884 |
taattgatggaaaatgaaagatagatagtaa |
25807914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 13433465 - 13433595
Alignment:
| Q |
1 |
tatgaataattttaaaatgtaacccctcgatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13433465 |
tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttg |
13433564 |
T |
|
| Q |
101 |
caactgatgggaaatgaaagatagatagtaa |
131 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
13433565 |
taactgatggaaaatgaaagatagatagtaa |
13433595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 16857290 - 16857232
Alignment:
| Q |
45 |
attataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgcaa |
103 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
16857290 |
attataatgcattcattgtacaacttgcatgaagtgaagtaaatgcagtgcttttgcaa |
16857232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 26615320 - 26615380
Alignment:
| Q |
45 |
attataatgcattcattgtgtaac--ttgcatgaagtgaagtaaatggagtgtttttgcaa |
103 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26615320 |
attataatgcattcattgtacaacaattgcatgaagtgaagtaaatgaagtgtttttgcaa |
26615380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 26721248 - 26721308
Alignment:
| Q |
45 |
attataatgcattcattgtgtaac--ttgcatgaagtgaagtaaatggagtgtttttgcaa |
103 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26721248 |
attataatgcattcattgtacaacaattgcatgaagtgaagtaaatgaagtgtttttgcaa |
26721308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 26623883 - 26623918
Alignment:
| Q |
201 |
acatctccaacaagatcaatcgtgtgcccttacatg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
26623883 |
acatctccaacaagatcaatcgtgtgcccttacatg |
26623918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 26729860 - 26729895
Alignment:
| Q |
201 |
acatctccaacaagatcaatcgtgtgcccttacatg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
26729860 |
acatctccaacaagatcaatcgtgtgcccttacatg |
26729895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 31285171 - 31285206
Alignment:
| Q |
201 |
acatctccaacaagatcaatcgtgtgcccttacatg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
31285171 |
acatctccaacaagatcaatcgtgtgcccttacatg |
31285206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 26647082 - 26647115
Alignment:
| Q |
192 |
tagtggaagacatctccaacaagatcaatcgtgt |
225 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
26647082 |
tagtcgaagacatctccaacaagatcaatcgtgt |
26647115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 26753050 - 26753083
Alignment:
| Q |
192 |
tagtggaagacatctccaacaagatcaatcgtgt |
225 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
26753050 |
tagtcgaagacatctccaacaagatcaatcgtgt |
26753083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 10171 - 10229
Alignment:
| Q |
45 |
attataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgcaa |
103 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
10171 |
attataatgcattcattgcacaacttgcatgaagtgaagtaaatgcagtgcttttgcaa |
10229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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