View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3285_high_2 (Length: 418)

Name: NF3285_high_2
Description: NF3285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3285_high_2
NF3285_high_2
[»] chr5 (4 HSPs)
chr5 (17-411)||(28622775-28623170)
chr5 (20-411)||(37797725-37798120)
chr5 (247-411)||(5650383-5650543)
chr5 (17-70)||(7125114-7125168)
[»] chr7 (6 HSPs)
chr7 (17-411)||(4639481-4639876)
chr7 (146-408)||(14741680-14741942)
chr7 (17-173)||(14741524-14741681)
chr7 (327-411)||(37915664-37915749)
chr7 (17-71)||(37915853-37915907)
chr7 (328-379)||(23017424-23017475)
[»] chr1 (11 HSPs)
chr1 (17-411)||(41353540-41353935)
chr1 (17-411)||(11578707-11579102)
chr1 (17-411)||(26757734-26758130)
chr1 (146-411)||(8147592-8147856)
chr1 (146-411)||(1242888-1243151)
chr1 (17-173)||(8147436-8147593)
chr1 (17-173)||(1243150-1243308)
chr1 (247-319)||(5208952-5209024)
chr1 (17-71)||(4005186-4005241)
chr1 (17-71)||(9192143-9192198)
chr1 (17-70)||(51107011-51107065)
[»] chr8 (4 HSPs)
chr8 (17-411)||(19484313-19484707)
chr8 (328-379)||(27878220-27878271)
chr8 (328-379)||(28018401-28018452)
chr8 (329-400)||(37131164-37131236)
[»] chr3 (5 HSPs)
chr3 (17-411)||(49296214-49296608)
chr3 (17-411)||(53836060-53836452)
chr3 (119-246)||(22489269-22489396)
chr3 (17-70)||(8598757-8598811)
chr3 (17-70)||(22489434-22489487)
[»] chr4 (8 HSPs)
chr4 (17-411)||(29469261-29469657)
chr4 (82-411)||(8084357-8084685)
chr4 (327-411)||(42937187-42937272)
chr4 (20-71)||(42937362-42937413)
chr4 (17-49)||(8084307-8084339)
chr4 (247-318)||(25842652-25842724)
chr4 (260-317)||(40317342-40317400)
chr4 (260-317)||(40327416-40327474)
[»] chr2 (6 HSPs)
chr2 (146-408)||(18899513-18899775)
chr2 (17-173)||(18899774-18899931)
chr2 (247-310)||(2308423-2308487)
chr2 (266-408)||(32294233-32294376)
chr2 (332-400)||(43617911-43617980)
chr2 (328-408)||(38295303-38295383)
[»] chr6 (6 HSPs)
chr6 (247-319)||(10110787-10110859)
chr6 (17-71)||(10113728-10113782)
chr6 (17-71)||(1463618-1463673)
chr6 (17-71)||(6788198-6788253)
chr6 (328-379)||(16439141-16439192)
chr6 (245-318)||(21010583-21010657)
[»] scaffold0263 (1 HSPs)
scaffold0263 (21-111)||(376-467)


Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 28623170 - 28622775
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgnnnnnnnnnc-cttcaaaaatggtccattgtttttggcccannnn 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||| |||||||||||||||||        
T  28623170 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgtatttttttttcttcaaaaatggcccattgtttttggcccatttt 28623071  T
Q  116 nnn-caagcccaaatgaaacatatttactttctagctttacaacacgtttcagcttactgaagtgaagcatttcatatcattttctttgagttttcaaga 214  Q
        |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  28623070 ttttcaagcccaaatgaaacatatttactttctagctttacaacacgtttcaacttacttaagtgaaacatttcatatcattttctttgagttttcaaga 28622971  T
Q  215 accggggagcgaatgaaacattaggtttccgaagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattaccta 314  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28622970 acaggggagcgaatgaaacattaggtttccgaagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattaccta 28622871  T
Q  315 gtttgnnnnnnnggatagttttattctcaagtttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 411  Q
    |||||       |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28622870 gtttg-ttttttggatagttttattctcaagtttagaaacttgtaaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 28622775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 37798120 - 37797725
Alignment:
Q  20 gtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgnnnnnnnnnc----cttcaaaaatggtccattgtttttggcccannnn 115  Q
    ||||||||||||||||||||| |||||||| ||||||| |||||||||||||              |||||||| ||| |||||||||||||||||        
T  37798120 gtaaactcgtgtgaaatcgggtgagtttactgtttttgtgagtttactcctgtattttttttttctcttcaaaa-tggcccattgtttttggcccatttt 37798022  T
Q  116 nnncaagcccaaatgaaa-catatttactttctagctttacaacacgtttcagcttactgaagtgaagcatttcatatcattttctttgagttttcaaga 214  Q
       ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37798021 tttcaagcccaaatgaaaacatatttactttctagctttacaacacgtttcagcttactgaagtgaaacatttcatatcattttctttgagttttcaaga 37797922  T
Q  215 accggggagcgaatgaaacattaggtttccgaagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattaccta 314  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  37797921 acaggggagcgaatgaaacattaggtttccgaagatgaagatatagatgataatggtgttatggaactttagaagatcgacctttcgaagaaattaccta 37797822  T
Q  315 gtttgnnnnnnnggatagttttattctcaagtttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 411  Q
    |||||       ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37797821 gtttgtttttttggatagttttattctcaagtttataaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacttatgctt 37797725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 247 - 411
Target Start/End: Complemental strand, 5650543 - 5650383
Alignment:
Q  247 agatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattacctagtttgnnnnnnnggatagttttattctcaagt 346  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||        |||||||||||||||||||    
T  5650543 agatgaagacatagatgagaatgatgttatggaactttagaagattgaccttttgaagaaattacctaatttgttttttt-gatagttttattctcaagt 5650445  T
Q  347 ttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 411  Q
    ||||||||||||||||||| ||||||||||||||| |   ||||||||||||||||| |||||||    
T  5650444 ttagaaacttgtgaaacttgctttttgggatgggttg---ttagagacttatgaaacttatgctt 5650383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 7125168 - 7125114
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccgt-ttttgcgagtttactcct 70  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  7125168 tcagtaaactcgtgtaaaatcgggcgagtttaccgttttttgcgagtttactcct 7125114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 4639876 - 4639481
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgnnnnnnnnn-ccttcaaaaatggtccattgtttttggcccannnn 115  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||          ||||||||||||| |||||||||||||||||        
T  4639876 tcagtaaactcatgtgaaatcgggcgagtttaccgtttttacgagtttactcctgtattttttttccttcaaaaatggcccattgtttttggcccatttt 4639777  T
Q  116 nnncaagcccaaatgaaa-catatttactttctagctttacaacacgtttcagcttactgaagtgaagcatttcatatcattttctttgagttttcaaga 214  Q
       ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  4639776 tttcaagcccaaatgaaaacatatttactttctagctttacaacacgtttcaacttactgaagtgaaacatttcatatcattttctttgagttttcaaga 4639677  T
Q  215 accggggagcgaatgaaacattaggtttccgaagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattaccta 314  Q
    || |||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4639676 acaggggagtgaatgaaacattaggtttcctaagatgaagatataaatgagaatgatgttatggaactttagaagattgacctttcgaagaaattaccta 4639577  T
Q  315 gtttgnnnnnnnggatagttttattctcaagtttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 411  Q
    |||||       ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4639576 gtttg-ttttttggatagttttattctcaagtttataaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 4639481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 146 - 408
Target Start/End: Original strand, 14741680 - 14741942
Alignment:
Q  146 ctagctttacaacacg-tttcagcttactgaagtgaagcatttcatatcattttctttgagttttcaagaaccggggagcgaatgaaacattaggtttcc 244  Q
    ||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  14741680 ctagcattacaacacggtttcagcttactgaagtgaaacatttcatatcattttctttaagttttcaagaacaggggagcgaatgaaacattaggtttcc 14741779  T
Q  245 gaagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattacctagtttgnnnnnnnggatagttttattctcaa 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  14741780 gaagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattacctagtttg-ttttttggatagttttattctcaa 14741878  T
Q  345 gtttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14741879 gtttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatg 14741942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 14741524 - 14741681
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgnnnnnnnnnc-cttcaaaaatggtccattgtttttggcccannnn 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |           |||||||||||| |||||||||||||||||        
T  14741524 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactccagtatttttttttcttcaaaaatggcccattgtttttggcccatttt 14741623  T
Q  116 nnncaagcccaaatgaaacatatttactttctagctttacaacacgtttcagcttact 173  Q
       |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14741624 tttcaagcccaaatgaaacatatttactttctagctttacaacacgtttaagcttact 14741681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 327 - 411
Target Start/End: Complemental strand, 37915749 - 37915664
Alignment:
Q  327 ggatagttttattctcaagtttagaaacttgtgaaactttctttttgggatggg-tagactttagagacttatgaaacctatgctt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||| ||||||||    
T  37915749 ggatagttttattctcaagtttagaaacttgtgaaactttctttttgggatgggccagactttaaagacttatgaaatctatgctt 37915664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 37915907 - 37915853
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctg 71  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  37915907 tcagtaaactcgtgtgaaattgggcgagtttaccgtttttgtgagtttactcctg 37915853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 379
Target Start/End: Original strand, 23017424 - 23017475
Alignment:
Q  328 gatagttttattctcaagtttagaaacttgtgaaactttctttttgggatgg 379  Q
    ||||||||||||  ||| |||||||||||||||||||| |||||| ||||||    
T  23017424 gatagttttattaacaactttagaaacttgtgaaacttgcttttttggatgg 23017475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 411
Target Start/End: Original strand, 41353540 - 41353935
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgnnnnnnnnnc-cttcaaaaatggtccattgtttttggcccannnn 115  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||           |||||||||||| ||||| |||||||||||        
T  41353540 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttacgagtttactcctgtatttttttttcttcaaaaatggcccattttttttggcccatttt 41353639  T
Q  116 nnncaagcccaaatgaaa-catatttactttctagctttacaacacgtttcagcttactgaagtgaagcatttcatatcattttctttgagttttcaaga 214  Q
       ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  41353640 tttcaagcccaaatgaaaacatatttactttctagctttacaacacgtttcaacttactgaagtgaaacatttcatatcattttctttgagttttcaaga 41353739  T
Q  215 accggggagcgaatgaaacattaggtttccgaagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattaccta 314  Q
    || |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41353740 acaggggagtgaatgaaacattaggtttccgaagatgaagatataaatgagaatgatgttatggaactttagaagattgacctttcgaagaaattaccta 41353839  T
Q  315 gtttgnnnnnnnggatagttttattctcaagtttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 411  Q
    |||||       ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41353840 gtttg-ttttttggatagttttattctcaagtttataaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 41353935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 11579102 - 11578707
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgnnnnnnnnnc-cttcaaaaatggtccattgtttttggcccannnn 115  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||           |||||||||||| ||||| ||||| |||||        
T  11579102 tcagtaaactcgtgtgaaatcgggcgagttcaccgtttttgcgagtttactcctgtatttttttttcttcaaaaatggcccatttttttttgcccatttt 11579003  T
Q  116 nnncaagcccaaatgaaa-catatttactttctagctttacaacacgtttcagcttactgaagtgaagcatttcatatcattttctttgagttttcaaga 214  Q
       ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11579002 tttcaagcccaaatgaaaacatatttactttctagctttacaacacgtttcagcttactgaagtgaaacatttcatatcattttctttgagttttcaaga 11578903  T
Q  215 accggggagcgaatgaaacattaggtttccgaagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattaccta 314  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11578902 acaggggagcgaatgaaacattatgtttccgaagatgaagatatagatgagaatggtgttatggaactttagaagattgacctttcgaagaaattaccta 11578803  T
Q  315 gtttgnnnnnnnggatagttttattctcaagtttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 411  Q
    |||||       ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11578802 gtttg-ttttttggatagttttattctcaagtttataaacttatgaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 11578707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 411
Target Start/End: Original strand, 26757734 - 26758130
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgnnnnnnnnnc--cttcaaaaatggtccattgtttttggcccannn 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||| |||||||||||||||||       
T  26757734 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgtattttttttttcttcaaaaatggcccattgtttttggcccattt 26757833  T
Q  115 nnnncaagcccaaatgaaa-catatttactttctagctttacaacacgtttcagcttactgaagtgaagcatttcatatcattttctttgagttttcaag 213  Q
        ||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  26757834 ttttcaagcccaaatgaaaacatatttactttctagctt-acaacatgtttcagcttactcaagtgaaacatttcatatcattttctttgagttttcaag 26757932  T
Q  214 aaccggggagcgaatgaaacattaggtttccgaagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattacct 313  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26757933 aacaggggagcgaatgaaacattaggttttcgaagatgaagatatagatgagaatggtgttatggaactttagaagattgacctttcgaagaaattacct 26758032  T
Q  314 agtttgnnnnnnnggatagttttattctcaagtttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 411  Q
    ||||||       ||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26758033 agtttgtttttatggatagttttattctcaagtttataaatttgtgaaactttgtttttgggatgggtagactttagagacttatgaaacctatgctt 26758130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 146 - 411
Target Start/End: Original strand, 8147592 - 8147856
Alignment:
Q  146 ctagctttacaacacgtttcagcttactgaagtgaagcatttcatatcattttctttgagttttcaagaaccggggagcgaatgaaacattaggtttccg 245  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8147592 ctagctttacaacacgtttcaacttacttaagtgaaacatttcatatcattttctttgagttttcaagaacaggggagcgaatgaaacattaggtttccg 8147691  T
Q  246 aagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattacctagtttgnnnnnnnggatagttttattctcaag 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  8147692 aagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattacctagtttg-gtttttggatagttttattctcaag 8147790  T
Q  346 tttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 411  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8147791 tttagaaacttgtaaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 8147856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 146 - 411
Target Start/End: Complemental strand, 1243151 - 1242888
Alignment:
Q  146 ctagctttacaacacgtttcagcttactgaagtgaagcatttcatatcattttctttgagttttcaagaaccggggagcgaatgaaacattaggtttccg 245  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||| |||| ||| |||||||||||||| ||| |||||||||||||||| |||||||    
T  1243151 ctagctttacaactcgtttcagcttactgaagtgaaacatttcatattatttccttggagttttcaagaacaggg-agcgaatgaaacattaagtttccg 1243053  T
Q  246 aagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattacctagtttgnnnnnnnggatagttttattctcaag 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  1243052 aagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattacctagtttg-ttttttggatagttttattctcaag 1242954  T
Q  346 tttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1242953 tttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 1242888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 8147436 - 8147593
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgnnnnnnnnnc-cttcaaaaatggtccattgtttttggcccannnn 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||| |||||||||||||||||        
T  8147436 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgtatttttttttcttcaaaaatggcccattgtttttggcccatttt 8147535  T
Q  116 nnncaagcccaaatgaaacatatttactttctagctttacaacacgtttcagcttact 173  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8147536 tttcaagcccaaatgaaacatatttactttctagctttacaacacgtttcagcttact 8147593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 1243308 - 1243150
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgnnnnnnnnnc--cttcaaaaatggtccattgtttttggcccannn 114  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||            ||| |||||||  |||||||||||||||||       
T  1243308 tcagtaaactcatgtgaaatcgggcgagtttaccgttttagcgagtttactcctgtattttttttttcttaaaaaatgtcccattgtttttggcccattt 1243209  T
Q  115 nnnncaagcccaaatgaaacatatttactttctagctttacaacacgtttcagcttact 173  Q
        ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1243208 ttttcaagctcaaatgaaacatatttactttctagctttacaacatgtttcagcttact 1243150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 319
Target Start/End: Complemental strand, 5209024 - 5208952
Alignment:
Q  247 agatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattacctagtttg 319  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5209024 agatgaagacatagatgagaatgatgttatggaactttagaagattgaccttttgaagaaattacctagtttg 5208952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 4005186 - 4005241
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccg-tttttgcgagtttactcctg 71  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  4005186 tcagtaaactcgtgtaaaatcgggcgagtttaccgttttttgcgagtttactcctg 4005241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 9192143 - 9192198
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccg-tttttgcgagtttactcctg 71  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  9192143 tcagtaaactcgtgtaaaatcgggcgagtttaccgttttttgcgagtttactcctg 9192198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 51107011 - 51107065
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccg-tttttgcgagtttactcct 70  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  51107011 tcagtaaactcgtgtaaaatcgggcgagtttaccgttttttgcgagtttactcct 51107065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 411
Target Start/End: Original strand, 19484313 - 19484707
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgnnnnnnnnnc-cttcaaaaatggtccattgtttttggcccannnn 115  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||           |||||||||||| ||||| |||||||||||        
T  19484313 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttacgagtttactcctgtatttttttttcttcaaaaatggcccatt-tttttggcccatttt 19484411  T
Q  116 nnncaagcccaaatgaaa-catatttactttctagctttacaacacgtttcagcttactgaagtgaagcatttcatatcattttctttgagttttcaaga 214  Q
       ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  19484412 tttcaagcccaaatgaaaacatatttactttctagctttacaacacgtttcaacttactgaagtgaaacatttcatatcattttctttgagttttcaaga 19484511  T
Q  215 accggggagcgaatgaaacattaggtttccgaagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattaccta 314  Q
    || |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19484512 acaggggagtgaatgaaacattaggtttccgaagatgaagatataaatgagaatgatgttatggaactttagaagattgacctttcgaagaaattaccta 19484611  T
Q  315 gtttgnnnnnnnggatagttttattctcaagtttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 411  Q
    |||||       ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19484612 gtttg-ttttttggatagttttattctcaagtttataaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 19484707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 379
Target Start/End: Complemental strand, 27878271 - 27878220
Alignment:
Q  328 gatagttttattctcaagtttagaaacttgtgaaactttctttttgggatgg 379  Q
    |||||||||||| |||| ||||| |||||||||||||| |||||| ||||||    
T  27878271 gatagttttattatcaactttaggaacttgtgaaacttgcttttttggatgg 27878220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 379
Target Start/End: Complemental strand, 28018452 - 28018401
Alignment:
Q  328 gatagttttattctcaagtttagaaacttgtgaaactttctttttgggatgg 379  Q
    |||||||||||| |||| ||||| |||||||||||||| |||||| ||||||    
T  28018452 gatagttttattatcaactttaggaacttgtgaaacttgcttttttggatgg 28018401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 37131236 - 37131164
Alignment:
Q  329 atagttttattctcaagtttagaaacttgtgaaactttctttttgggatgggt-agactttagagacttatga 400  Q
    |||||||||||  ||| ||||| |||||||||||||| | |||| |||||| | |||||| ||||||||||||    
T  37131236 atagttttattaacaattttaggaacttgtgaaacttgcctttttggatggttaagacttaagagacttatga 37131164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 411
Target Start/End: Original strand, 49296214 - 49296608
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgnnnnnnnnnc-cttcaaaaatggtccattgtttttggcccannnn 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||| |||||||||||||||||        
T  49296214 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgtatttttttttcttcaaaaatggcccattgtttttggcccatttt 49296313  T
Q  116 nnncaagcccaaatgaaa-catatttactttctagctttacaacacgtttcagcttactgaagtgaagcatttcatatcattttctttgagttttcaaga 214  Q
       ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  49296314 tttcaagcccaaatgaaaacatatttactttctagctt-acaacacgtttcagcttactgaagtgaaacatttcatatcattttctttgagttttcaaga 49296412  T
Q  215 accggggagcgaatgaaacattaggtttccgaagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattaccta 314  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||    
T  49296413 acaggggagcgaatgaaacattaggtttccgaagatgaagatatagatgagaatggtgttatgaaactttagaagattgacctttcgaagaaattactta 49296512  T
Q  315 gtttgnnnnnnnggatagttttattctcaagtttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 411  Q
    |||||       ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  49296513 gtttg-ttttttggatagttttattctcaagtttataaacttgtgaaactttatttttgggatgggtagactttagagacttatgaaacctatgctt 49296608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 411
Target Start/End: Original strand, 53836060 - 53836452
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgnnnnnnnnnccttcaaaaatggtccattgtttttggcccannnnn 116  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||         | ||||||||||| |||||||||| ||||||         
T  53836060 tcagtaaactcgtgtgaaatcgggcaagttaaccgtttttgcgagtttactcctgtttttttttc-ttcaaaaatggcccattgtttt-ggcccattttt 53836157  T
Q  117 nncaagcccaaatgaaa-catatttactttctagctttacaacacgtttcagcttactgaagtgaagcatttcatatcattttctttgagttttcaagaa 215  Q
      ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  53836158 ttcaagcccaaatgaaaacatatttactttctagctttacaacacgtttaagcttactgaagtgaaacatttcatatcattttcttagagttttcaagaa 53836257  T
Q  216 ccggggagcgaatgaaacattaggtttccgaagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattacctag 315  Q
    | ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  53836258 caggggagcgaatgaaacattaggtttccaaagatgaagatatagatgagaatggtgttatggaactttagaagattgacctttcgaagaaattacctag 53836357  T
Q  316 tttgnnnnnnnggatagttttattctcaagtttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 411  Q
    ||||       ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  53836358 tttg-ttttttggatagttttattctcaagtttataaacttgtgaaacttcctttttgggatgggtagactttagagacttatgaaacctatgctt 53836452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 119 - 246
Target Start/End: Complemental strand, 22489396 - 22489269
Alignment:
Q  119 caagcccaaatgaaacatatttactttctagctttacaacacgtttcagcttactgaagtgaagcatttcatatcattttctttgagttttcaagaaccg 218  Q
    |||||||||||||||| | | |||||||||| |||||||||||||| |||||||| ||||||| ||||||||| |||||||| ||||||||||||||| |    
T  22489396 caagcccaaatgaaacctttctactttctagatttacaacacgttttagcttactaaagtgaaacatttcatagcattttctctgagttttcaagaacag 22489297  T
Q  219 gggagcgaatgaaacattaggtttccga 246  Q
    ||||||||||||||| ||||||||||||    
T  22489296 gggagcgaatgaaacgttaggtttccga 22489269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 8598757 - 8598811
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccg-tttttgcgagtttactcct 70  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  8598757 tcagtaaactcgtgtaaaatcgggcgagtttaccgttttttgcgagtttactcct 8598811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 22489487 - 22489434
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcct 70  Q
    ||||||||||||| |||| ||| ||||||||||||||||||| || ||||||||    
T  22489487 tcagtaaactcgtatgaagtcgagcgagtttaccgtttttgctaggttactcct 22489434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 411
Target Start/End: Original strand, 29469261 - 29469657
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgnnnnnnnnnc--cttcaaaaatggtccattgtttttggcccannn 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||| |||||||||||||||||       
T  29469261 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgtattttttttttcttcaaaaatggcccattgtttttggcccattt 29469360  T
Q  115 nnnn-caagcccaaatgaaa-catatttactttctagctttacaacacgtttcagcttactgaagtgaagcatttcatatcattttctttgagttttcaa 212  Q
         ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  29469361 tttttcaagcccaaatgaaaacatatttactttctagctt-acaatacgtttcagcttattgaagtgaaacatttcatatcattttctttgagttttcaa 29469459  T
Q  213 gaaccggggagcgaatgaaacattaggtttccgaagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattacc 312  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29469460 gaacaggggagcgaatgaaacattaggtttccgaagatgaagatatagatgagaatggtgttatggaactttagaagattgacctttcgaagaaattacc 29469559  T
Q  313 tagtttgnnnnnnnggatagttttattctcaagtttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatgctt 411  Q
    |||||||       ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29469560 tagtttg-ttttttggatagttttattctcaagtttataaacttgtgaaactttgtttttgggatgggtagactttagagacttatgaaacctatgctt 29469657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 82 - 411
Target Start/End: Original strand, 8084357 - 8084685
Alignment:
Q  82 cttcaaaaatggtccattgtttttggcccannnnnnncaagcccaaatga-aacatatttactttctagctttacaacacgtttcagcttactgaagtga 180  Q
    |||||||||||| |||||||||||||||||       ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8084357 cttcaaaaatggcccattgtttttggcccatttttttcaagcccaaatgacaacatatttactttctagctt-acaacacgtttcagcttactgaagtga 8084455  T
Q  181 agcatttcatatcattttctttgagttttcaagaaccggggagcgaatgaaacattaggtttccgaagatgaagatatagatgagaatgatgttatggaa 280  Q
    | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8084456 aacatttcatatcattttctttgagttttcaagaacaggggagcgaatgaaacattaggtttccgaagatgaagatatagatgagaatggtgttatggaa 8084555  T
Q  281 ctttagaagattgacctttcgaagaaattacctagtttgnnnnnnnggatagttttattctcaagtttagaaacttgtgaaactttctttttgggatggg 380  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  8084556 ctttagaagattgacctttcgaagaaattacctagtttg-ttttctggatagttttattctcaagtttataaacttgtgaaactttatttttgggatggg 8084654  T
Q  381 tagactttagagacttatgaaacctatgctt 411  Q
    |||||||||||||||||||||||||||||||    
T  8084655 tagactttagagacttatgaaacctatgctt 8084685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 327 - 411
Target Start/End: Complemental strand, 42937272 - 42937187
Alignment:
Q  327 ggatagttttattctcaagtttagaaacttgtgaaactttctttttgggatggg-tagactttagagacttatgaaacctatgctt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  42937272 ggatagttttattctcaagtttagaaacttgtgaaactttctttttgggatgggctagactttagagacttatgtaacctatgctt 42937187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 42937413 - 42937362
Alignment:
Q  20 gtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctg 71  Q
    |||||||||||||||||  |||||||||||||||||| ||||||||||||||    
T  42937413 gtaaactcgtgtgaaattaggcgagtttaccgtttttccgagtttactcctg 42937362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 8084307 - 8084339
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttac 49  Q
    |||||||||||||||||||||||||||||||||    
T  8084307 tcagtaaactcgtgtgaaatcgggcgagtttac 8084339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 25842724 - 25842652
Alignment:
Q  247 agatgaagatatagatgagaatgatgttatggaacttt-agaagattgacctttcgaagaaattacctagttt 318  Q
    ||||||||| || ||||| ||||||||||||||||||| | || ||||| |||| |||||||||| |||||||    
T  25842724 agatgaagacatcgatgataatgatgttatggaactttaaaaacattgatcttttgaagaaattaactagttt 25842652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 40317400 - 40317342
Alignment:
Q  260 gatgagaatgatgttatggaactttagaa-gattgacctttcgaagaaattacctagtt 317  Q
    ||||| ||||||||| ||||||||||||| |||||| |||| |||||||||| ||||||    
T  40317400 gatgataatgatgttgtggaactttagaaggattgatcttttgaagaaattaactagtt 40317342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 40327474 - 40327416
Alignment:
Q  260 gatgagaatgatgttatggaactttagaa-gattgacctttcgaagaaattacctagtt 317  Q
    ||||| ||||||||| ||||||||||||| |||||| |||| |||||||||| ||||||    
T  40327474 gatgataatgatgttgtggaactttagaaggattgatcttttgaagaaattaactagtt 40327416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 146 - 408
Target Start/End: Complemental strand, 18899775 - 18899513
Alignment:
Q  146 ctagctttacaacacg-tttcagcttactgaagtgaagcatttcatatcattttctttgagttttcaagaaccggggagcgaatgaaacattaggtttcc 244  Q
    ||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  18899775 ctagcattacaacacggtttcagcttactgaagtgaaacatttcatatcattttctttaagttttcaagaacaggggagcgaatgaaacattaggtttcc 18899676  T
Q  245 gaagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattacctagtttgnnnnnnnggatagttttattctcaa 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  18899675 gaagatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattacctagtttg-ttttttggatagttttattctcaa 18899577  T
Q  345 gtttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18899576 gtttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatg 18899513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 18899931 - 18899774
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctgnnnnnnnnnc-cttcaaaaatggtccattgtttttggcccannnn 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |           |||||||||||| |||||||||||||||||        
T  18899931 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactccagtatttttttttcttcaaaaatggcccattgtttttggcccatttt 18899832  T
Q  116 nnncaagcccaaatgaaacatatttactttctagctttacaacacgtttcagcttact 173  Q
       |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18899831 tttcaagcccaaatgaaacatatttactttctagctttacaacacgtttaagcttact 18899774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 2308487 - 2308423
Alignment:
Q  247 agatgaagatatagatgagaatgatgttatggaactttagaag-attgacctttcgaagaaatta 310  Q
    ||||||||| |||||||| |||||||||||||||||||||||| |||||||||| ||||||||||    
T  2308487 agatgaagacatagatgaaaatgatgttatggaactttagaagcattgaccttttgaagaaatta 2308423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 408
Target Start/End: Original strand, 32294233 - 32294376
Alignment:
Q  266 aatgatgttatggaactttagaag-attgacctttcgaagaaattacctagtttgnnnnnnnggatagttttattctcaagtttagaaacttgtgaaact 364  Q
    |||||||||||  ||||||| ||| ||||| |||| |||||||||| |||||||        |||||||||||||  ||| ||||| |||||||||||||    
T  32294233 aatgatgttataaaactttaaaaggattgatcttttgaagaaattaactagttt-attttttggatagttttattaacaactttaggaacttgtgaaact 32294331  T
Q  365 ttctttttgggatgggt-agactttagagacttatgaaacctatg 408  Q
    | |||||| |||||| | |||||| |||| |||||||||| ||||    
T  32294332 tgcttttttggatggttaagacttaagagtcttatgaaacttatg 32294376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 400
Target Start/End: Original strand, 43617911 - 43617980
Alignment:
Q  332 gttttattctcaagtttagaaacttgtgaaactttctttttgggatgggt-agactttagagacttatga 400  Q
    ||||||||  ||| |||||||||||||||||||| | |||| |||||| | |||||| ||||||||||||    
T  43617911 gttttattaacaactttagaaacttgtgaaacttgcctttttggatggttaagacttaagagacttatga 43617980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 38295383 - 38295303
Alignment:
Q  328 gatagttttattctcaagtttagaaacttgtgaaactttctttttgggatgggtagactttagagacttatgaaacctatg 408  Q
    ||||||||||||  ||| ||||| || |||||||||||||||||| |||||| |  |  ||| ||||||||||||| ||||    
T  38295383 gatagttttattagcaactttaggaatttgtgaaactttcttttttggatggcttaaacttaaagacttatgaaacttatg 38295303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 247 - 319
Target Start/End: Complemental strand, 10110859 - 10110787
Alignment:
Q  247 agatgaagatatagatgagaatgatgttatggaactttagaagattgacctttcgaagaaattacctagtttg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||    
T  10110859 agatgaagatatagatgagaatgatgttatggaactttagaagattgacctcttgaagaaattatctagtttg 10110787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 10113782 - 10113728
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctg 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10113782 tcagtaaactcgtgtgaaatcgggcgagtttaccgtttttgcgagtttactcctg 10113728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 1463673 - 1463618
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccgt-ttttgcgagtttactcctg 71  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  1463673 tcagtaaactcgtgtaaaatcgggcgagtttaccgttttttgcgagtttactcctg 1463618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 6788198 - 6788253
Alignment:
Q  17 tcagtaaactcgtgtgaaatcgggcgagtttaccg-tttttgcgagtttactcctg 71  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  6788198 tcagtaaactcgtgtaaaatcgggcgagtttaccgttttttgcgagtttactcctg 6788253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 379
Target Start/End: Original strand, 16439141 - 16439192
Alignment:
Q  328 gatagttttattctcaagtttagaaacttgtgaaactttctttttgggatgg 379  Q
    ||||||||||||  ||| |||||||||||||||||||| |||||| ||||||    
T  16439141 gatagttttattaacaactttagaaacttgtgaaacttgcttttttggatgg 16439192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 21010657 - 21010583
Alignment:
Q  245 gaagatgaagatatagatgagaatgatgttatggaactttagaa-gattgacctttcgaagaaattacctagttt 318  Q
    ||||||||||| |  ||||| |||||||||||| ||||||| || |||||| |||| |||||||||| |||||||    
T  21010657 gaagatgaagacaccgatgataatgatgttatgaaactttataaggattgaacttttgaagaaattaactagttt 21010583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 467 - 376
Alignment:
Q  21 taaactcgtgtgaaatcgggcgagtttaccgt-ttttgcgagtttactcctgnnnnnnnnnccttcaaaaatggtccattgtttttggccca 111  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||         ||||||||||||| || || |||||||||||    
T  467 taaactcgtgtaaaatcgggcgagtttaccgttttttgcgagtttactcctgtatttttttccttcaaaaatggccctttttttttggccca 376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University