View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3285_low_11 (Length: 219)
Name: NF3285_low_11
Description: NF3285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3285_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 46239002 - 46239213
Alignment:
| Q |
1 |
gtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcagatgagattgccatctatgctgtgggtgaaggaattgat |
100 |
Q |
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| T |
46239002 |
gtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcagatgagattgccatctatgctgtgggtgaaggaattgat |
46239101 |
T |
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| Q |
101 |
ggacagatttttgtggagcataatgttactaatatgtctgtcaaggttgatatgcctaactttgtggatttgaatgagtctagtggggaagatgaagaca |
200 |
Q |
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| T |
46239102 |
ggacaaatttttgttgagcataatgttactaatatgtctgtcaaggttgatatgcctaactttgtggatttgaatgagtctagtggggaagatgaagaca |
46239201 |
T |
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| Q |
201 |
atttgatgatgt |
212 |
Q |
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|||||||||||| |
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| T |
46239202 |
atttgatgatgt |
46239213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 3455655 - 3455444
Alignment:
| Q |
1 |
gtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcagatgagattgccatctatgctgtgggtgaaggaattgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455655 |
gtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacagcattgcagatgagattgccatctatgctgtgggtgaaggaattgat |
3455556 |
T |
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| Q |
101 |
ggacagatttttgtggagcataatgttactaatatgtctgtcaaggttgatatgcctaactttgtggatttgaatgagtctagtggggaagatgaagaca |
200 |
Q |
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| T |
3455555 |
ggacaaatttttgttgagcataatgttactaatatgtctgtcaaggttgatatgcctaactttgtggatttgaatgagtctagtggggaagatgaagaca |
3455456 |
T |
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| Q |
201 |
atttgatgatgt |
212 |
Q |
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|||||||||||| |
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| T |
3455455 |
atttgatgatgt |
3455444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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