View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3285_low_3 (Length: 380)
Name: NF3285_low_3
Description: NF3285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3285_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 31 - 361
Target Start/End: Original strand, 52879558 - 52879889
Alignment:
| Q |
31 |
ctctctcaatgtgccttatagaagatgttttgtttttaatgtatttgttatggcttttgatggtctctcagattcgacaaagataataagaagggggtat |
130 |
Q |
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| T |
52879558 |
ctctctcaatgtgccttatagaagatgttttgtttttaatgtatttgttatggcttttgatggtctctcagattcgacaaagataataagaagggggtat |
52879657 |
T |
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| Q |
131 |
ttgaaggatattttatttggctggtaattggctatggctttggtaagtgcttttgtagttgtaatacacta-ttttttcttcattcgtgtgtatctgtat |
229 |
Q |
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| T |
52879658 |
ttgaaggatattttatttggctggtaattggctatggctttggtaagtgcttttgtagttgtaatacactatttttttcttcattcgtgtgtatctgtat |
52879757 |
T |
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| Q |
230 |
taaaggaaaacaataaaaactcatggacactactactctttgaactaatagtgtttaatatttttattgaagttctattaatgattatcttaaagataca |
329 |
Q |
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| T |
52879758 |
taaaggaaaacaataaaaactcatggacactactactctttgaactaatagtgtttaatatttttattgaagttctattaatgattatcttaaagataca |
52879857 |
T |
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| Q |
330 |
ctagttaataaggtaatattaatattccatcc |
361 |
Q |
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| T |
52879858 |
ctagttaataaggtaatattaatatttcatcc |
52879889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 253398 - 253312
Alignment:
| Q |
100 |
agattcgacaaagataataagaagggggtatttgaaggatattttatttggctggtaattggctatggctttggtaagtgcttttgt |
186 |
Q |
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| T |
253398 |
agatttgacaaagataataagaagggagtattaaatggatattttctttggttggtaattggctatggaattggtaagttcttttgt |
253312 |
T |
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