View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3285_low_4 (Length: 323)
Name: NF3285_low_4
Description: NF3285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3285_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 38569126 - 38568844
Alignment:
| Q |
18 |
ctatcatgacagtgctcctcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgaccaagtgaccaaggtaacataaaa |
117 |
Q |
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| T |
38569126 |
ctatcatgacagtgctcctcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgaccaagtgaccaaggtaacataaaa |
38569027 |
T |
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| Q |
118 |
ccatgctacgaaattatattcgttaatgaatgatttctctttttgtcgtagtctagcgtggtaaatcagggagtgtcgtgtccgaacacctgcatatcaa |
217 |
Q |
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| T |
38569026 |
ccatgctacgaaattatattcgttaatgaatgatttctctttttgtcgtagtctagcgtggtaaatcggggagtgtcgtgtccgaacacctgcatatcaa |
38568927 |
T |
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| Q |
218 |
catctttgcagctataccaaacgagctgtacttatgggatgaatgagatttttctttaatttgtagaataaattttcagttac |
300 |
Q |
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| T |
38568926 |
catctttgcagctataccaaacgagctgtacttatgggatgaatgagatttttctttaatttgtagaataaattttcagttac |
38568844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 38527695 - 38527615
Alignment:
| Q |
36 |
tcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgaccaagtgaccaaggtaacataaa |
116 |
Q |
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| T |
38527695 |
tcggtcaaatgattgatagttttggtagtaaccaaagtaacaccaccgatgttgtagaacaagtgtccaaggtatcataaa |
38527615 |
T |
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