View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3285_low_5 (Length: 316)
Name: NF3285_low_5
Description: NF3285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3285_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 47298010 - 47298127
Alignment:
| Q |
17 |
aaaaatcaattatagaataaaaactacaaattctaattttcatgtagaattaattccggagtgatggtttgaacatgggtttcac--gtactcactttaa |
114 |
Q |
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| T |
47298010 |
aaaaatcaattatagaataaaaactacaaatcctaattttcatgtagaattaattccggagtgatggtttgaacatgggtttcacatttactcactttag |
47298109 |
T |
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| Q |
115 |
aaagatgaaatttggtca |
132 |
Q |
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| T |
47298110 |
aaagatgaaatttggtca |
47298127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 222 - 306
Target Start/End: Original strand, 47298234 - 47298318
Alignment:
| Q |
222 |
gcaatttcttagttccctttaacttctacggaatcatacttgtagttcctgtgtgaatgcgagattatttgtcatagttcctttg |
306 |
Q |
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| T |
47298234 |
gcaatttattagttccctttaacttctacagaatcatacttgtagtttctgtgtgaatgcgagattatttgtcatagttcctttg |
47298318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 47298176 - 47298214
Alignment:
| Q |
163 |
gatctgtgacgggtgtgaaagggaaattattctttctaa |
201 |
Q |
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| T |
47298176 |
gatctgtgacgggtgtgaaagggaaattattctttctaa |
47298214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 25359608 - 25359667
Alignment:
| Q |
18 |
aaaatcaattatagaat-aaaaactacaaattctaattttcatgtagaattaattccggag |
77 |
Q |
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| T |
25359608 |
aaaatcaattatagaataaaaaactacaaattctaa-cttcaagtagaatcaattctggag |
25359667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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