View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3285_low_8 (Length: 290)
Name: NF3285_low_8
Description: NF3285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3285_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 86 - 279
Target Start/End: Original strand, 28825272 - 28825468
Alignment:
| Q |
86 |
ctagagggtaaccaaagtcaggaatagcatttcagtccctcaaacggacgtttactagttcccttctttcagaatttggtattgttttgtgtcagccata |
185 |
Q |
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| T |
28825272 |
ctagagggtaaccaaagtcaggaatagcatttcagtccctcaaacggacgtttactagttcccttctttcagaatttggtattgttttgtgtcaaccatc |
28825371 |
T |
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| Q |
186 |
aagttttctattcatttttgacaatctct---tcctccaagtgccaacatttatattggacagtgattgattctatacgtccctcttacgtattcat |
279 |
Q |
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| T |
28825372 |
aagttttctattcatttttgacaatctcttcctcctccaagtgccaacatttatattggacagtgattgattctatacgtccctcttacgtattcat |
28825468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 28825208 - 28825249
Alignment:
| Q |
20 |
aagcatgtatctattttctgatgaaatgatattgatgtccct |
61 |
Q |
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| T |
28825208 |
aagcatgtatctactttctgatgaaatgatattgatgtccct |
28825249 |
T |
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