View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3286_high_10 (Length: 250)
Name: NF3286_high_10
Description: NF3286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3286_high_10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 23422009 - 23421777
Alignment:
| Q |
18 |
aattccacctaactccaaacccaatgcaagctcaaaaatttgttcttgatttaatgttccac---tcccaaatgaaacataaagaacagatttacatgat |
114 |
Q |
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| T |
23422009 |
aattccacttaactccaaacccaatgcaagttcaaaaatttattcttgatttaatgttccaccactcccaaatgaaacataaagaacagatttacatgat |
23421910 |
T |
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| Q |
115 |
tgattatccaaccaacccatcaaaaattctgattcctttaccttaatgtttgaaccactcccaaaacgaagatatactctactctctactgtaagtttgt |
214 |
Q |
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| T |
23421909 |
tgattatccaaccaacccataaaaaattctgattcctttaccttaatggttgaaccactcccaaaacgaagatatactctactctctactgtaagtttgt |
23421810 |
T |
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| Q |
215 |
ggcagtcaggtaccaattcattttttaaaagagctt |
250 |
Q |
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| T |
23421809 |
gaca---tggtaccaattcattttttaaaagagctt |
23421777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 551354 - 551504
Alignment:
| Q |
21 |
tccacctaactccaaacccaatgcaagctcaaaaatttgttcttgatttaatgttccac---tcccaaatgaaacataaagaacagatttacatgattga |
117 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| |
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| T |
551354 |
tccacttaattccaaacccaatgcaagctcaaaaatttgttcttgatttaatgttccaccactcccaaatgaaacataaagaacagagttacatggttga |
551453 |
T |
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| Q |
118 |
ttatccaaccaacccatcaaaaattctgattcctttaccttaatgtttgaa |
168 |
Q |
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| T |
551454 |
ttatctaaccaacccataaaaaattctgattcccttaccttaatgcttgaa |
551504 |
T |
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