View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3286_high_5 (Length: 292)
Name: NF3286_high_5
Description: NF3286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3286_high_5 |
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| [»] scaffold0186 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 39 - 287
Target Start/End: Complemental strand, 23421721 - 23421473
Alignment:
| Q |
39 |
tagagcttataatcaattagagttacaattaaaaataagtctatttttcttcttttagtaacaatagaatcaataagctatagctttgagttttaatatt |
138 |
Q |
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| T |
23421721 |
tagagcttataatgaattagagttataattaaaaataaatctatttttcttcttttagtaacaatagaatcaataagctatagctttcagttttaatatt |
23421622 |
T |
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| Q |
139 |
ataaaattatatgaaaaatttgtttatagtttaatatatatttgttctggttctaattaacttgagtagaatagattaactaaatgataattttataaat |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23421621 |
ataaaattatatgaaaaatttgtttatagtttaatatatatttgttctggttctaattaacttgagtagaatagattaactaaatgataattttataaat |
23421522 |
T |
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| Q |
239 |
ttgtttttagttaaacgctttcttcacaactatcaccccctttgctact |
287 |
Q |
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| T |
23421521 |
ttgtttttagttaaacgctttcttcacaactatcacccccttcgctact |
23421473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 132845 - 132956
Alignment:
| Q |
176 |
atatttgttctggttctaattaacttgagtagaatagattaactaaatgataattttataaatttgtttttagttaaacgctttcttcacaactatcacc |
275 |
Q |
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||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| | ||||| |
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| T |
132845 |
atatttggtctgtttctgattaacttgagtagaatagattaactaaatgataattttataaatttgtttctaattaaatactttcttcacaattgtcacc |
132944 |
T |
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| Q |
276 |
ccctttgctact |
287 |
Q |
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| T |
132945 |
ccctttgctact |
132956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 109158 - 109221
Alignment:
| Q |
81 |
atttttcttcttttagtaacaatagaatcaataagctatagctttgagttttaatattataaaa |
144 |
Q |
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| T |
109158 |
attttccttcttttagtaacaatagaatcaataagttatacttttgagttttaatattataaaa |
109221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 109838 - 109900
Alignment:
| Q |
225 |
ataattttataaatttgtttttagttaaacgctttcttcacaactatcaccccctttgctact |
287 |
Q |
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| T |
109838 |
ataattttatgaatttggttttagttaaacactttcttcacaactattaccccattcgctact |
109900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 114649 - 114714
Alignment:
| Q |
39 |
tagagcttataatcaattagagttacaattaaaaataagtc-tatttttcttcttttagtaacaat |
103 |
Q |
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|||||| |||||| ||| ||||||||||||||||| || || | |||||||||||||||||||||| |
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| T |
114649 |
tagagcctataatgaataagagttacaattaaaaagaaatcttttttttcttcttttagtaacaat |
114714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 4023 - 4111
Alignment:
| Q |
61 |
ttacaattaaaaataagtctatttttcttcttttagtaacaatagaatcaataagctatagctttgagttttaatattataaaattata |
149 |
Q |
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| T |
4023 |
ttacaattaaaaagaaatctccttttcttcttttagtaacaatagaaccaatacgttataactttgagttttaatattataaaattata |
4111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 277
Target Start/End: Original strand, 4267 - 4350
Alignment:
| Q |
194 |
attaacttgagtagaatagattaactaaatgataattttataaatttgtttttagttaaacgctttcttcacaactatcacccc |
277 |
Q |
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| T |
4267 |
attaactttagtagaatagattaactaactgataattttataaatttgtttctaattaaacactttcattacaattgtcacccc |
4350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 277
Target Start/End: Complemental strand, 28732506 - 28732444
Alignment:
| Q |
215 |
taactaaatgataattttataaatttgtttttagttaaacgctttcttcacaactatcacccc |
277 |
Q |
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||||||| | |||||||||||||||||||| || |||||||||||||| |||||| ||||||| |
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| T |
28732506 |
taactaactcataattttataaatttgtttctaattaaacgctttctttacaactttcacccc |
28732444 |
T |
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