View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3286_low_13 (Length: 249)
Name: NF3286_low_13
Description: NF3286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3286_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 41876508 - 41876275
Alignment:
| Q |
1 |
ccacaaaaatttattgcaaaatatttgattttaccatgtaaaatttccgagacatgctcggagcccgtctgctatggtattgacctcaggcagtgttatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
41876508 |
ccacaaaaatttattgcaaaatatttgattttaccatgtaaaatttccgagacatgctcggagcccatctgctatggtattgacctcaggcaatgttatt |
41876409 |
T |
|
| Q |
101 |
atcctcccagctgctttagattgcgctgcatcatcagctccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaatgcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41876408 |
atcctcccagctgctttagattgcgctgcatcatcagctccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaatgcta |
41876309 |
T |
|
| Q |
201 |
ctcccgatgccataccactgcctacaattttcat |
234 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |
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| T |
41876308 |
ctcccgatgccataccaccgcctacaattttcat |
41876275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 31 - 204
Target Start/End: Original strand, 40867588 - 40867761
Alignment:
| Q |
31 |
ttaccatgtaaaatttccgagacatgctcggagcccgtctgctatggtattgacctcaggcagtgttattatcctcccagctgctttagattgcgctgca |
130 |
Q |
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| T |
40867588 |
ttaccatgtgaaatctccaagaaatgctcgtagcccgtcagctatagtattggtctcgggcaatgttattatccttccagctgctttagattgtgctgcg |
40867687 |
T |
|
| Q |
131 |
tcatcagctccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaatgctactcc |
204 |
Q |
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| T |
40867688 |
tcatcggcccctttaggttcagcagccaaaatacgaatggccgggttgatagacttggcagccaatgctactcc |
40867761 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 24800358 - 24800462
Alignment:
| Q |
96 |
ttattatcctcccagctgctttagattgcgctgcatcatcagctccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaa |
195 |
Q |
| |
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|||||||||| || |||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||| ||||| ||||||||||||| |
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| T |
24800358 |
ttattatccttccggctgctttggattgagctgcatcatcagctcctttaggctcagcagccaaaatacgaatagccggattaatcgccttggcagctat |
24800457 |
T |
|
| Q |
196 |
tgcta |
200 |
Q |
| |
|
||||| |
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| T |
24800458 |
tgcta |
24800462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 24817434 - 24817538
Alignment:
| Q |
96 |
ttattatcctcccagctgctttagattgcgctgcatcatcagctccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaa |
195 |
Q |
| |
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|||||||||| || |||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||| ||||| ||||||||||||| |
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| T |
24817434 |
ttattatccttccggctgctttggattgagctgcatcatcagctcctttaggctcagcagccaaaatacgaatagccggattaatcgccttggcagctat |
24817533 |
T |
|
| Q |
196 |
tgcta |
200 |
Q |
| |
|
||||| |
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|
| T |
24817534 |
tgcta |
24817538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 204
Target Start/End: Original strand, 9735930 - 9736090
Alignment:
| Q |
46 |
tccgagacatgctcggagcccgtctgctatggtattgacctcaggcagtgttattatcctcccagctgctttagattgcgctgcat--catcagctcctt |
143 |
Q |
| |
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||||||| ||||||| |||| ||||||||| |||| | |||||||| | |||||||||||| | || |||||||||| ||||| |||||||||||| |
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| T |
9735930 |
tccgagaaatgctcgaagcctgtctgctataatatttatctcaggcaattttattatcctccttgttgtcttagattgcgatgcatatcatcagctcctt |
9736029 |
T |
|
| Q |
144 |
ttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaatgctactcc |
204 |
Q |
| |
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| |||||||| ||||||| | ||||| || |||||| || |||||||||| ||||||||| |
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| T |
9736030 |
tatgctcagcaaccaaaatacaaatagccgagttaatagctttggcagctattgctactcc |
9736090 |
T |
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