View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3286_low_5 (Length: 309)
Name: NF3286_low_5
Description: NF3286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3286_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 31733101 - 31733396
Alignment:
| Q |
9 |
acatcatcatattaaaaacgtgacactacaagtgtgaggcaactgtatttattctacccattccttttgttttgtactgtgctgtgtggttttgcttatt |
108 |
Q |
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| T |
31733101 |
acatcttcatattaaaaacgtgacactacaagtgtgaggcaactgtatttattctacccattccttttgttttgtactgtgctgtgtggttttgcttatt |
31733200 |
T |
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| Q |
109 |
tggagtttttatatgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaagtttttggggtgtgagtttgagnnnnnnn |
208 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31733201 |
tggagtttttatttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaagtttttggggtgtgagttggagttttttt |
31733300 |
T |
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| Q |
209 |
nnnactgaactatgctgtgaaattggtaggatcttatgctatgtgtttagatcccgcgatttgtgatattgtgaccccttctcgatcctgcctatg |
304 |
Q |
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| T |
31733301 |
ttgactgaactatgctgtgaaattggtaggatcttatgctatgtgttcagatcccgcgatttgtgatattgtgaccccttctcgatcctgcctatg |
31733396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 31735793 - 31735962
Alignment:
| Q |
22 |
aaaaacgtgacactacaa-gtgtgaggcaactgtatttattctacccattccttttgttttgtactgtgctgtgtggttttgcttatttggagtttttat |
120 |
Q |
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| T |
31735793 |
aaaaacatgacactgcaacgtctgaggcaattgtttttattctactcattccttttgttttgtactc--ctgtgttgttttgcttatttggagtttttag |
31735890 |
T |
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| Q |
121 |
atgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaagtttttggggtgt |
192 |
Q |
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| T |
31735891 |
ttgtggcatttgacctttgtatgactatatgttgtgatcctgaattggagtttcatcaagtttttgtggtgt |
31735962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 31736020 - 31736065
Alignment:
| Q |
259 |
atcccgcgatttgtgatattgtgaccccttctcgatcctgcctatg |
304 |
Q |
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|||||| ||||||||||||||||| ||||||| | ||||||||||| |
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| T |
31736020 |
atcccgtgatttgtgatattgtgatcccttcttggtcctgcctatg |
31736065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 6498092 - 6498387
Alignment:
| Q |
9 |
acatcatcatattaaaaacgtgacactacaagtgtgaggcaactgtatttattctacccattccttttgttttgtactgtgctgtgtggttttgcttatt |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
6498092 |
acatcttcatattaaaaacgtgacactacaagtgtgaggcaactgtatttattctacccattccttttgttttgtactctgctgtgttgttttgcttatt |
6498191 |
T |
|
| Q |
109 |
tggagtttttatatgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaagtttttggggtgtgagtttgagnnnnnnn |
208 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6498192 |
tggagtttttatttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaagtttttggggtgtgagttggagttttttt |
6498291 |
T |
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| Q |
209 |
nnnactgaactatgctgtgaaattggtaggatcttatgctatgtgtttagatcccgcgatttgtgatattgtgaccccttctcgatcctgcctatg |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6498292 |
tttactgaactatgctgtgaaattggtaggatcttatgctatgtgtttagatcccgcgatttgtgatattgtgaccccttcttgatcctgcctatg |
6498387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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