View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3286_low_6 (Length: 295)
Name: NF3286_low_6
Description: NF3286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3286_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 4903596 - 4903329
Alignment:
| Q |
18 |
ctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacgg--ccg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4903596 |
ctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattctatcgtgaagaagtttccaagtaaaaaccaccactttcgacggtgccg |
4903497 |
T |
|
| Q |
116 |
ggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccga |
215 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4903496 |
ggctcttccaaatatgcgagaaaaccttcctcgggagaccatcaagatcttcctcccttatcatcaatgtttccaatttagaatacattgattttaccga |
4903397 |
T |
|
| Q |
216 |
aaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattca |
283 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4903396 |
aaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattca |
4903329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 1556905 - 1556828
Alignment:
| Q |
183 |
tgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctc |
260 |
Q |
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|||||||||||| |||||||||||||| ||||| ||||| || ||||| ||||||||||| |||||| |||| |||| |
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| T |
1556905 |
tgtttccaattttgaatacattgatttgaccgagaaagctccgtcctcctccaacctccacttccaatgatcctcctc |
1556828 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 1557054 - 1556987
Alignment:
| Q |
36 |
tttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccac |
103 |
Q |
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| T |
1557054 |
tttctaattgcaaggttggtctttgtaggaattctatcgtggagaagtttccaagaaaaaaccaccac |
1556987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 22153961 - 22154207
Alignment:
| Q |
18 |
ctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacgg--ccg |
115 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| ||| |
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| T |
22153961 |
ctatccggtgggagcgagttccttatagcaaggttgatctttgttgggattcta---------------------aaaaccatcacttccgacggtgccg |
22154039 |
T |
|
| Q |
116 |
ggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccga |
215 |
Q |
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||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| || |
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| T |
22154040 |
ggctcttccaaatatgcgaaaaaaccttcgtcgggagaccatcaagaccatcctcccttatcatcaatgtttccaatttagaataaatttattttattga |
22154139 |
T |
|
| Q |
216 |
aaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattca |
283 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
22154140 |
caaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaacacaaacccattca |
22154207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 22209876 - 22210122
Alignment:
| Q |
18 |
ctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacgg--ccg |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| ||| |
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| T |
22209876 |
ctatccggtgggagcgagttccttatagcaaggttgatctttgttgggattcta---------------------aaaaccatcacttccgacggtgccg |
22209954 |
T |
|
| Q |
116 |
ggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccga |
215 |
Q |
| |
|
||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| || |
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| T |
22209955 |
ggctcttccaaatatgcgaaaaaaccttcgtcgggagaccatcaagaccatcctcccttatcatcaatgtttccaatttagaataaatttattttattga |
22210054 |
T |
|
| Q |
216 |
aaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattca |
283 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22210055 |
caaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaacacaaacccattca |
22210122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 34821645 - 34821847
Alignment:
| Q |
42 |
atagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacg--gccgggctcttccaaatatgcgagaaaa |
139 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||||||| || | |||| ||||||| ||| |||| || | |
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| T |
34821645 |
atagcaaggttgatttttgttgggattctatcatgaagaagtttccaagcaaagacgaccactttagatggagccgaactcttccgaatttgcgcaaaca |
34821744 |
T |
|
| Q |
140 |
ccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacct |
239 |
Q |
| |
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|||||||| | | | |||| || || | |||||||||||||||| ||||||||||||||||||||||||| || || ||||| |||||||| |
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| T |
34821745 |
ccctcctctccccatcttgaagattgtcaaccggcaccatcaatgtttccaatctagaatacattgattttaccgaaaaggccccatcctcctccaacct |
34821844 |
T |
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| Q |
240 |
cca |
242 |
Q |
| |
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||| |
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| T |
34821845 |
cca |
34821847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 243
Target Start/End: Complemental strand, 53561944 - 53561813
Alignment:
| Q |
112 |
gccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgatttta |
211 |
Q |
| |
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||||| ||||||||||||||| || ||||||||| || ||||||| | || ||||| | |||||||||||||||||| |||||||| ||||| | |
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| T |
53561944 |
gccggactcttccaaatatgcttaaacaccctcctctctagttcatcaaggctctcttccctcaccatcaatgtttccaatttggaatacatagatttaa |
53561845 |
T |
|
| Q |
212 |
ccgaaaaagcaccttcctcttccaacctccaa |
243 |
Q |
| |
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||||||||| ||| ||||||||||| |||||| |
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|
| T |
53561844 |
ccgaaaaagtaccgtcctcttccaaactccaa |
53561813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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