View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3287_low_2 (Length: 415)
Name: NF3287_low_2
Description: NF3287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3287_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 32604779 - 32604551
Alignment:
| Q |
11 |
cagagacgcgtgccgtcgtttaatttgtcttgggaatttacnnnnnnngaaaatgttggtttcaacccatgtcaaatctcgtcacacattttgctaacat |
110 |
Q |
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| T |
32604779 |
cagagacgcgtgccgtcgtttaatttgtcttgggaatttactttttttgaaa-tgttggtttcaacccatgtcaaatctcgtcgcacattttgctaacat |
32604681 |
T |
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| Q |
111 |
cattgtacgttcgaccttccattttctatcgtatgtgcaatctgagccatcttgttttttactcttattgttttcaacactatgaatagaaatctaaggc |
210 |
Q |
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| T |
32604680 |
cattgtgcgttcgaccttccattttctatggtatgtgcaacctgagccatcttgttttttactcttattgttttcaacactatgaatagaaatctaaggc |
32604581 |
T |
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| Q |
211 |
tccatcccaaatcacatgaaagcttccaag |
240 |
Q |
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| T |
32604580 |
tccatcccaaatcacatgaaagcttccaag |
32604551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 332 - 397
Target Start/End: Complemental strand, 32604444 - 32604379
Alignment:
| Q |
332 |
ttgtcccttaggaagtttgagtggtcctagttgcctattgaaggagtggttctagaatggaacata |
397 |
Q |
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| T |
32604444 |
ttgtcccttaggaagtttgagtggtcctagttccctattgaaggagtggttctagaatggaacata |
32604379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 32604490 - 32604451
Alignment:
| Q |
301 |
gtccctcgtaataagttgccctattagaatcttgtccctt |
340 |
Q |
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| T |
32604490 |
gtccctcgtaataagttggcctattaggatcttgtccctt |
32604451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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