View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3288-Insertion-1 (Length: 1013)

Name: NF3288-Insertion-1
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3288-Insertion-1
NF3288-Insertion-1
[»] chr1 (15 HSPs)
chr1 (7-395)||(30150479-30150861)
chr1 (697-977)||(30112390-30112664)
chr1 (697-977)||(30153043-30153317)
chr1 (7-306)||(30190295-30190584)
chr1 (697-871)||(30156487-30156662)
chr1 (181-391)||(30155057-30155267)
chr1 (164-389)||(30165485-30165712)
chr1 (164-366)||(30171205-30171409)
chr1 (164-366)||(30186746-30186950)
chr1 (7-131)||(30155354-30155478)
chr1 (543-657)||(47513720-47513834)
chr1 (413-536)||(47513893-47514023)
chr1 (35-71)||(30156451-30156487)
chr1 (7-43)||(30168935-30168971)
chr1 (326-365)||(30190154-30190193)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-126; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 7 - 395
Target Start/End: Complemental strand, 30150861 - 30150479
Alignment:
Q  7 atcaatcttaggtgttgtagacttgtagttatcttcttttatatgtttaagcatttgagaccctgnnnnnnncttttgcaagcaagcaagcatagatcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||       ||||||||||||||||||||||||||||    
T  30150861 atcaatcttaggtgttgtagacttgtagttatcttcttttacatgtttaagaatttgagaccctgttttcttcttttgcaagcaagcaagcatagatcaa 30150762  T
Q  107 tttgttattcttgactggtttctatatgttagggattgtgaagcttatgtttcaatgatgatagagatgttagaaaagggaaattttgtttgaacctaaa 206  Q
    |||||| |||||||||||||||||| ||| ||   ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30150761 tttgttgttcttgactggtttctatttgt-ag---tt-------ttatgtttcaatgatgatagagatgttagaaaagggaaattttgtttgaacctaaa 30150673  T
Q  207 ttgatgtagcttgtgctgaattatc-tgttattctgttaccaa--tatcattttttaccaattcatgtttactttggtaaaacttgttttaatattaacc 303  Q
    ||||||||||||||||||||||||| ||||||||||| |||||  |||  | |||||||||||||||||||||||||||||||||||||||||| |||||    
T  30150672 ttgatgtagcttgtgctgaattatcttgttattctgtcaccaaagtattttcttttaccaattcatgtttactttggtaaaacttgttttaataataacc 30150573  T
Q  304 ttaa-agtattgta-ttttactattgatgtatttctccaaacaagtattgcagtctagtaaaaaatagtaggattgcattgatctcaactggta 395  Q
    |||| ||||| ||| |||||||| |||||| ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  30150572 ttaagagtatcgtatttttactaatgatgtttttctccaaacaaatattgcagtctagtaaaaaatactaggattacattgatctcaactggta 30150479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 697 - 977
Target Start/End: Complemental strand, 30112664 - 30112390
Alignment:
Q  697 gcattcttattggtgatctcttgaaatgagtgcataagtgggtctcacaaaatacacttaagttttttatcaagggaatgttatagacttatagtattag 796  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30112664 gcattcttaatggtgatctcttgaaatgagtgcataagtgggtctcacaaaatacacttaagttttttatcaagggaatgttatagacttatagtattag 30112565  T
Q  797 acgacaataaatgaatgtatcacatcccttgaaaagca-aaaagaacgtatcacaatcatttgttgttttctacatgaatatggtgtttt-cggctaact 894  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||| || | ||||    
T  30112564 acgacaataaatgaatgtatcacatcccttgaaaagcaaaaaagaacgtatcacaaccatttgttgttttctacatg-atat-gtgttttccgcccaact 30112467  T
Q  895 ctctgaatatttcatggaggtaggtagttttttcctacattgatcccggctggtagcatgcataattaatgctagtggtaatg 977  Q
    || ||||| ||||||   |||| |||||||||| ||||||||||| |  |||||| |||||||||||||||||||||||||||    
T  30112466 ct-tgaat-tttcat---ggtacgtagtttttt-ctacattgatctcaactggtaacatgcataattaatgctagtggtaatg 30112390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 697 - 977
Target Start/End: Complemental strand, 30153317 - 30153043
Alignment:
Q  697 gcattcttattggtgatctcttgaaatgagtgcataagtgggtctcacaaaatacacttaagttttttatcaagggaatgttatagacttatagtattag 796  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30153317 gcattcttaatggtgatctcttgaaatgagtgcataagtgggtctcacaaaatacacttaagttttttatcaagggaatgttatagacttatagtattag 30153218  T
Q  797 acgacaataaatgaatgtatcacatcccttgaaaagca-aaaagaacgtatcacaatcatttgttgttttctacatgaatatggtgtttt-cggctaact 894  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||| || | ||||    
T  30153217 acgacaataaatgaatgtatcacatcccttgaaaagcaaaaaagaacgtatcacaaccatttgttgttttctacatg-atat-gtgttttccgcccaact 30153120  T
Q  895 ctctgaatatttcatggaggtaggtagttttttcctacattgatcccggctggtagcatgcataattaatgctagtggtaatg 977  Q
    || ||||| ||||||   |||| |||||||||| ||||||||||| |  |||||| |||||||||||||||||||||||||||    
T  30153119 ct-tgaat-tttcat---ggtacgtagtttttt-ctacattgatctcaactggtaacatgcataattaatgctagtggtaatg 30153043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 7 - 306
Target Start/End: Complemental strand, 30190584 - 30190295
Alignment:
Q  7 atcaatcttaggtgttgtagacttgtagttatcttcttttatatgtttaagcatttgagaccctgnnnnnnncttttgcaagcaagcaagcatagatcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       |||||||||||||||| |||||||||||    
T  30190584 atcaatcttaggtgttgtagacttgtagttatcttcttttatatgttaaagcatttgagaccctgttttcttcttttgcaagcaagcatgcatagatcaa 30190485  T
Q  107 tttgttattcttgactggtttctatatgttagggattgtgaagcttatgtttcaatgatgatagagatgttagaaaagggaaattttgtttgaacctaaa 206  Q
    |||||| |||||||||||||||||| ||| ||   ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30190484 tttgttgttcttgactggtttctatttgt-ag---tt-------ttatgtttcaatgatgatagagatgttagaaaagggaaattttgtttgaacctaaa 30190396  T
Q  207 ttgatgtagcttgtgctgaattatctgttattctgttaccaatatca-ttttttaccaattcatgtttactttggtaaaacttgttttaatattaacctt 305  Q
    |||||| | |||||||||||||||||||| |||||| ||||   | | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30190395 ttgatgcaacttgtgctgaattatctgttgttctgtcaccagagtaatttttttaccaattcatgtttactttggtaaaacttgttttaatattaacctt 30190296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 160; E-Value: 1e-84
Query Start/End: Original strand, 697 - 871
Target Start/End: Complemental strand, 30156662 - 30156487
Alignment:
Q  697 gcattcttattggtgatctcttgaaatgagtgcataagtgggtctcacaaaatacacttaagttttttatcaagggaatgttatagacttatagtattag 796  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30156662 gcattcttaatggtgatctcttgaaatgagtgcataagtgggtctcacaaaatacacttaagttttttatcaagggaatgttatagacttatagtattag 30156563  T
Q  797 acgacaataaatgaatgtatcacatcccttgaaaagca-aaaagaacgtatcacaatcatttgttgttttctacat 871  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  30156562 acgacaataaatgaatgtatcacatcccttgaaaagcaaaaaagaacgtatcacaaccatttgttgttttctacat 30156487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 181 - 391
Target Start/End: Complemental strand, 30155267 - 30155057
Alignment:
Q  181 aaagggaaattttgtttgaacctaaattgatgtagcttgtgctgaattatctgttattctgttaccaatatcattttttaccaattcatgtttactttgg 280  Q
    |||||||||||||||| | ||||||||||||| | ||||||||||||||||||||||||||| ||||   | ||||||||||||||||||||||||||||    
T  30155267 aaagggaaattttgttaggacctaaattgatgcaacttgtgctgaattatctgttattctgtcaccagagtaattttttaccaattcatgtttactttgg 30155168  T
Q  281 taaaacttgttttaatattaaccttaaagtattgtattttactattgatgtatttctccaaacaagtattgcagtctagtaaaaaatagtaggattgcat 380  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||| |||| | ||||||||||||||||||||||| ||||| |||||||| ||    
T  30155167 taaaacttgttttaatattaaccttagagtattgtattttactagtgatgtttttcccgaaacaagtattgcagtctagtaagaaatactaggattgaat 30155068  T
Q  381 tgatctcaact 391  Q
    |||||||||||    
T  30155067 tgatctcaact 30155057  T

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Target: chr1; HSP #7
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 164 - 389
Target Start/End: Complemental strand, 30165712 - 30165485
Alignment:
Q  164 atgatagagatgttagaaaagggaaattttgtttgaacctaaattgatgtagcttgtgctgaattatctgttattctgttaccaatatcattttttacca 263  Q
    |||||||||||||||||||| |||||||||||| | || ||||||||| || ||||||||||||||||||||||||||| |||||| | |||||||||||    
T  30165712 atgatagagatgttagaaaaaggaaattttgttgggacgtaaattgatataacttgtgctgaattatctgttattctgtcaccaatgtaattttttacca 30165613  T
Q  264 attcatgtttactttggtaaaacttgttttaatattaaccttaaagtattgtattttactattgatgtatttctccaaacaagtattgcagtctagtaaa 363  Q
    ||||||||||||||||| ||||||||||||| | ||||||||| | ||||||||||||||| |||||| ||||||| |||||||||||||||| ||||||    
T  30165612 attcatgtttactttggaaaaacttgttttattgttaaccttagaatattgtattttactagtgatgtttttctcctaacaagtattgcagtccagtaaa 30165513  T
Q  364 aaatag--taggattgcattgatctcaa 389  Q
    ||| ||   |||||||||||| ||||||    
T  30165512 aaaaagcaaaggattgcattgttctcaa 30165485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 164 - 366
Target Start/End: Complemental strand, 30171409 - 30171205
Alignment:
Q  164 atgatagagatgttagaaaagggaaattttgtttgaacctaaattgatgtagcttgtgctgaattatctgttattctgttaccaa--tatcattttttac 261  Q
    ||||||||||||||||||||||||||||||||| |  | ||||||||| || |||||||||||||| ||| |||||||| |||||  |||  | ||||||    
T  30171409 atgatagagatgttagaaaagggaaattttgttggggcgtaaattgatataacttgtgctgaattagctgctattctgtcaccaaagtattttcttttac 30171310  T
Q  262 caattcatgtttactttggtaaaacttgttttaatattaaccttaaagtattgtattttactattgatgtatttctccaaacaagtattgcagtctagta 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||| |||||| ||||||| |||||||||| ||||| ||||    
T  30171309 caattcatgtttactttggtaaaacttgttttaatattaaccttagaatattttattttactagtgatgtttttctcctaacaagtatttcagtccagta 30171210  T
Q  362 aaaaa 366  Q
    |||||    
T  30171209 aaaaa 30171205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 164 - 366
Target Start/End: Complemental strand, 30186950 - 30186746
Alignment:
Q  164 atgatagagatgttagaaaagggaaattttgtttgaacctaaattgatgtagcttgtgctgaattatctgttattctgttaccaa--tatcattttttac 261  Q
    ||||||||||||||||||||||||||||||||| |  | ||||||||| || |||||||||||||| ||| |||||||| |||||  |||  | ||||||    
T  30186950 atgatagagatgttagaaaagggaaattttgttggggcgtaaattgatataacttgtgctgaattagctgctattctgtcaccaaagtattttcttttac 30186851  T
Q  262 caattcatgtttactttggtaaaacttgttttaatattaaccttaaagtattgtattttactattgatgtatttctccaaacaagtattgcagtctagta 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||| |||||| ||||||| |||||||||| ||||| ||||    
T  30186850 caattcatgtttactttggtaaaacttgttttaatattaaccttagaatattttattttactagtgatgtttttctcctaacaagtatttcagtccagta 30186751  T
Q  362 aaaaa 366  Q
    |||||    
T  30186750 aaaaa 30186746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 30155478 - 30155354
Alignment:
Q  7 atcaatcttaggtgttgtagacttgtagttatcttcttttatatgtttaagcatttgagaccctgnnnnnnncttttgcaagcaagcaagcatagatcaa 106  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||       ||||||||||||||||||||||||||||    
T  30155478 atcaatcttaggtgttgtagacttgtagttacctttttttatatgttaaagcatttgagaccctgttttcttcttttgcaagcaagcaagcatagatcaa 30155379  T
Q  107 tttgttattcttgactggtttctat 131  Q
    |||||| ||||||||||||||||||    
T  30155378 tttgttgttcttgactggtttctat 30155354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 543 - 657
Target Start/End: Complemental strand, 47513834 - 47513720
Alignment:
Q  543 tagttaatttacttgtgaaattcagtttaattgaaatgatactgcaagtcatacagtgctcatagctgctgcattttgatggatgaaatcaaagtctaat 642  Q
    |||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||   |||| |||||||||||||||||||||| ||||||||||    
T  47513834 tagttaatttacttatgaaattcagttaaattgaaatgatacttcaagtcatacagtgccattagccgctgcattttgatggatgaaatgaaagtctaat 47513735  T
Q  643 ggctatcattatggt 657  Q
    ||||||| |||||||    
T  47513734 ggctatcgttatggt 47513720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 413 - 536
Target Start/End: Complemental strand, 47514023 - 47513893
Alignment:
Q  413 attggagagtggcctagttgtagaagat-------atacacaaataaagcatatacatgaaattttgctctccatgaa-ttttgaaatttagaaagaacc 504  Q
    |||||||||||||||||||||||||||        ||| ||||||||||||| |||||||||||||||||||| | || ||||  ||||||||||| |||    
T  47514023 attggagagtggcctagttgtagaagaagatgtgcataaacaaataaagcatgtacatgaaattttgctctccgttaatttttttaatttagaaagcacc 47513924  T
Q  505 tctattgcggtttactttatgcaatagttgtt 536  Q
    ||| |  || |||| | |||||||||||||||    
T  47513923 tct-taccgatttaatgtatgcaatagttgtt 47513893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 30156487 - 30156451
Alignment:
Q  35 ttatcttcttttatatgtttaagcatttgagaccctg 71  Q
    |||||||||||||||||||||||||||||||||||||    
T  30156487 ttatcttcttttatatgtttaagcatttgagaccctg 30156451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 30168971 - 30168935
Alignment:
Q  7 atcaatcttaggtgttgtagacttgtagttatcttct 43  Q
    |||||||||||||||||||||||||||||||||||||    
T  30168971 atcaatcttaggtgttgtagacttgtagttatcttct 30168935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 365
Target Start/End: Complemental strand, 30190193 - 30190154
Alignment:
Q  326 tgatgtatttctccaaacaagtattgcagtctagtaaaaa 365  Q
    |||||| |||||||||||||| ||||||||||||||||||    
T  30190193 tgatgtttttctccaaacaagcattgcagtctagtaaaaa 30190154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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