View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288-Insertion-10 (Length: 458)
Name: NF3288-Insertion-10
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288-Insertion-10 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 7 - 458
Target Start/End: Complemental strand, 13188687 - 13188236
Alignment:
| Q |
7 |
atatacaatgtaccttcaaggagtggtcaagatattccttctagtgtaattgaaatattggctcaaaatccaaattttgttggtgtgaaagagtgtgttg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13188687 |
atatacaatgtaccttcaaggagtggtcaagatattcctcctagtgtaattgaaatattggctcaaaatccaaattttgtcggtgtgaaagagtgtgttg |
13188588 |
T |
|
| Q |
107 |
gaaatgagagggtgaaaatgtacacagataaaggaattgttgtgtggagcgttgataggttaagccatgaagctagacgggattgcggggctgttggagt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| ||||||| ||||||| |||||||||||||| |
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| T |
13188587 |
gaaatgagagggtgaaaatgtacacagataaaggaattgttgtgtggtgttttgatattttaagccatttagctagatgggattgtggggctgttggagt |
13188488 |
T |
|
| Q |
207 |
tcaatctgttgcaagcaatttggttccaggtttagtgagggaactcatgtttggggttaagaatcctacattgaattcaaagcttatgactttgtttgat |
306 |
Q |
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| T |
13188487 |
tcaatctgttgcaagcaatttggttcctggcttaataagggaactcatgtttgggggtaagaatcctacattgaattcaaagcttatgactttgtttgat |
13188388 |
T |
|
| Q |
307 |
tggctttttatagagccaagcccaattgctttgaacactgctcttgctcaacttggggttatcaagcctgttttcaggcttccatatgtacctcttactt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13188387 |
tggctttttatagagccaagcccaattgctttgaacactgctcttgctcaacttggggttatcaagcctgttttcaggcttccatatgtacctcttactt |
13188288 |
T |
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| Q |
407 |
tggaacaaagggtagggtttgtgaatttggtgaaggaaatgggcaggcaaca |
458 |
Q |
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| T |
13188287 |
tggaacaaagggtagggtttgtgaatttggtgaaggaaatgggcaggcaaca |
13188236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 6 - 458
Target Start/End: Complemental strand, 13180426 - 13179974
Alignment:
| Q |
6 |
catatacaatgtaccttcaaggagtggtcaagatattccttctagtgtaattgaaatattggctcaaaatccaaattttgttggtgtgaaagagtgtgtt |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
13180426 |
catatacaatgtaccttcaaggagtggtcaagatattcctcctagtgtaattgaaatattggctaaacatccaaattttgttggtgtgaaagagtgtgtg |
13180327 |
T |
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| Q |
106 |
ggaaatgagagggtgaaaatgtacacagataaaggaattgttgtgtggagcgttgataggttaagccatgaagctagacgggattgcggggctgttggag |
205 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| ||||||| ||||||| ||||||||||||| |
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| T |
13180326 |
ggaactgagagggtgaaaatgtacacagataaaggaattgttgtgtggtgttttgatattttaagccatttagctagatgggattgtggggctgttggag |
13180227 |
T |
|
| Q |
206 |
ttcaatctgttgcaagcaatttggttccaggtttagtgagggaactcatgtttggggttaagaatcctacattgaattcaaagcttatgactttgtttga |
305 |
Q |
| |
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| T |
13180226 |
ttcaatctgttgcaagcaatttggttccaggtttagtgagggaactcatgtttgggggtaagaatcctacattgaattcaaagcttatgactttgtttga |
13180127 |
T |
|
| Q |
306 |
ttggctttttatagagccaagcccaattgctttgaacactgctcttgctcaacttggggttatcaagcctgttttcaggcttccatatgtacctcttact |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| |
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| T |
13180126 |
ttggctttttatagagccaagcccaattgctttgaacactgctcttgctcaacttggggttatcaagcctgtttttaggctgccatatgtacctctgact |
13180027 |
T |
|
| Q |
406 |
ttggaacaaagggtagggtttgtgaatttggtgaaggaaatgggcaggcaaca |
458 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13180026 |
ttggaacaaaggatagggtttgtgaatttggtgaaggaaatgggcaggcaaca |
13179974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 13202625 - 13202493
Alignment:
| Q |
267 |
gaatcctacattgaattcaaagcttatgactttgtttgattggctttttatagagccaagcccaattgctttgaacactgctcttgctcaacttggggtt |
366 |
Q |
| |
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||||||| ||||||||||||||||||| |||||||||||||||||| | ||||| | |||||||| ||||||||||||||||||||||||||| ||| |
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| T |
13202625 |
gaatccttcattgaattcaaagcttattcctttgtttgattggctttctttagaggttatcccaattggtttgaacactgctcttgctcaacttggtgtt |
13202526 |
T |
|
| Q |
367 |
atcaagcctgttttcaggcttccatatgtacct |
399 |
Q |
| |
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|||||||||||||| ||||| |||||||||||| |
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| T |
13202525 |
atcaagcctgtttttaggctaccatatgtacct |
13202493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 168 - 446
Target Start/End: Complemental strand, 13191650 - 13191372
Alignment:
| Q |
168 |
aagccatgaagctagacgggattgcggggctgttggagttcaatctgttgcaagcaatttggttccaggtttagtgagggaactcatgtttggggttaag |
267 |
Q |
| |
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||||||||| |||||| |||| || || ||| |||| |||| |||||||| | || ||| |||| ||||| |||| |||||||||||| | |||| |
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| T |
13191650 |
aagccatgatgctagatgggaatgtggtgctactggacttcactctgttgctggaaacttgattcccggtttgatgagaaaactcatgtttgaaggtaag |
13191551 |
T |
|
| Q |
268 |
aatcctacattgaattcaaagcttatgactttgtttgattggctttttatagagccaagcccaattgctttgaacactgctcttgctcaacttggggtta |
367 |
Q |
| |
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| T |
13191550 |
aatcctacactgaatgcaaagttgaagcctttgtttgattggcttttccatgtgccggcaccgattgctttgaacactgctcttgctcaacttggggtta |
13191451 |
T |
|
| Q |
368 |
tcaagcctgttttcaggcttccatatgtacctcttactttggaacaaagggtagggtttgtgaatttggtgaaggaaat |
446 |
Q |
| |
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| ||||| |||||||||| ||| |||| ||| | || | ||||| ||| || |||||||||||||||||||||||| |
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| T |
13191450 |
ttaagccaattttcaggctaccacatgttcctatccctgttgaacagaggagagagtttgtgaatttggtgaaggaaat |
13191372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 154
Target Start/End: Complemental strand, 13202847 - 13202726
Alignment:
| Q |
33 |
tcaagatattccttctagtgtaattgaaatattggctcaaaatccaaattttgttggtgtgaaagagtgtgttggaaatgagagggtgaaaatgtacaca |
132 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||||||||| || |||||||||||| | ||||||||| | | ||||||||| ||||||| ||| || |
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| T |
13202847 |
tcaagatattcctcctagtgtggttgaaatattggctcaaaaccctaattttgttggtatcaaagagtgtatagcaaatgagagagtgaaaaagtatgca |
13202748 |
T |
|
| Q |
133 |
gataaaggaattgttgtgtgga |
154 |
Q |
| |
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| |||||||| ||||||||| |
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| T |
13202747 |
agtcaaggaatttttgtgtgga |
13202726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 13191815 - 13191680
Alignment:
| Q |
6 |
catatacaatgtaccttcaaggagtggtcaagatattccttctagtgtaattgaaatattggctcaaaatccaaattttgttggtgtgaaagagtgtgtt |
105 |
Q |
| |
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|||||||||||||||||| |||||| ||| ||||||||| |||||||| | |||| |||||| |||| || ||||| || || | || |||||| | |
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| T |
13191815 |
catatacaatgtaccttcgaggagttctcatgatattcctcctagtgtagtcgaaaagttggctgaaaaccctaatttggtcggcatcaaggagtgtata |
13191716 |
T |
|
| Q |
106 |
ggaaatgagagggtgaaaatgtacacagataaagga |
141 |
Q |
| |
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|||||||| || ||||| ||||| |||| ||| ||| |
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| T |
13191715 |
ggaaatgatagagtgaagatgtatacaggtaaggga |
13191680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 210 - 446
Target Start/End: Original strand, 28177188 - 28177424
Alignment:
| Q |
210 |
atctgttgcaagcaatttggttccaggtttagtgagggaactcatgtttggggttaagaatcctacattgaattcaaagcttatgactttgtttgattgg |
309 |
Q |
| |
|
||||||||||||||||||| |||| |||||| || | |||||||||||| ||| || ||||||||||||||||| ||||| || ||||| |||| ||| |
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| T |
28177188 |
atctgttgcaagcaatttgattccgggtttaatgcgagaactcatgtttcggggcaaaaatcctacattgaattctaagctcttgcctttgattgactgg |
28177287 |
T |
|
| Q |
310 |
ctttttatagagccaagcccaattgctttgaacactgctcttgctcaacttggggttatcaagcctgttttcaggcttccatatgtacctcttactttgg |
409 |
Q |
| |
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||||| ||||| || |||| ||||||||| ||||||||||||||||| ||| ||| ||| ||||||||||| |||| ||||||||| |||||| |
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| T |
28177288 |
cttttccacatgccaaatcccattggtttgaacacggctcttgctcaacttggagttgtcaggccagttttcaggctgccatttgtacctctccctttgg |
28177387 |
T |
|
| Q |
410 |
aacaaagggtagggtttgtgaatttggtgaaggaaat |
446 |
Q |
| |
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| ||||| ||| |||| ||||||||||||||||| |
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| T |
28177388 |
agaaaaggatagaatttgccaatttggtgaaggaaat |
28177424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 210 - 446
Target Start/End: Original strand, 39752637 - 39752873
Alignment:
| Q |
210 |
atctgttgcaagcaatttggttccaggtttagtgagggaactcatgtttggggttaagaatcctacattgaattcaaagcttatgactttgtttgattgg |
309 |
Q |
| |
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|||||||||||||||| || |||| || ||| || | |||||||||||||||| || ||||||||||||||||| ||||| || ||||| |||| ||| |
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| T |
39752637 |
atctgttgcaagcaatctgattcctgggttaatgcgagaactcatgtttgggggcaaaaatcctacattgaattctaagctcttgcctttgattgactgg |
39752736 |
T |
|
| Q |
310 |
ctttttatagagccaagcccaattgctttgaacactgctcttgctcaacttggggttatcaagcctgttttcaggcttccatatgtacctcttactttgg |
409 |
Q |
| |
|
||||| ||||| || |||| ||||||||| ||||||||||| ||||| ||| ||| ||| ||||||||||| |||| ||||||||| |||| | |
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| T |
39752737 |
cttttccacatgccaaatcccattggtttgaacacggctcttgctcagcttggagttgtcaggccagttttcaggctgccatttgtacctctccctttag |
39752836 |
T |
|
| Q |
410 |
aacaaagggtagggtttgtgaatttggtgaaggaaat |
446 |
Q |
| |
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| |||| ||| |||| ||||||||||||||||| |
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| T |
39752837 |
agaaaagaatagaatttgccaatttggtgaaggaaat |
39752873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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