View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288-Insertion-11 (Length: 443)
Name: NF3288-Insertion-11
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288-Insertion-11 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 8 - 443
Target Start/End: Complemental strand, 28282540 - 28282105
Alignment:
| Q |
8 |
catatatatcactctgctgcgcacatcttttctaatttactatttcttcataacaactgtctcatgtgcccttatatttcagacaaacttaagcctcgtc |
107 |
Q |
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| T |
28282540 |
catatatatcactttgctgcgcacattttttctaatttactatttcttcataacaactgtctcatgtgcccttatatttcagacaaacttaagcctcgtc |
28282441 |
T |
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| Q |
108 |
gtgaatgcctattttatatatacattaagcagaaatttcaaacatactttacaacactgttatattaacacaataaaaataatgcaaaaactaacttact |
207 |
Q |
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| T |
28282440 |
gtgaatgcctattttatatatacattaagcagaaagttcaaacatactttacaacactgttatattaacacaataaaaataatgcaaaaactaacttact |
28282341 |
T |
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| Q |
208 |
tgcagccgaagaaacctcctttcacattagctccagaaggatgttcagctttcagaatatgatgcttggtttgatcaattaagctgaatataagacaccc |
307 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28282340 |
tgcagccgaagaaacctcctttcacagtagctccagaaggatgttcagctttcagaatatgatgcttggtttgatcaattaagctgaatataagacaccc |
28282241 |
T |
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| Q |
308 |
aaagtgagaagaataacttgcttgtcgcccattccgctaaaataaacaattatgccaaatttatagaatcaactaatggcagtactgaattttctcctga |
407 |
Q |
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| T |
28282240 |
aaagtgagaagaataacttgcttgtcgcccattccgctaaaataaacaattacgccaaatttatagaatcaactaatggcagtaccgaattttctcctga |
28282141 |
T |
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| Q |
408 |
gcatactctccccacagcagaaacacaagtccttcc |
443 |
Q |
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| T |
28282140 |
gcatactctccccacagcagaaacacaagtccttcc |
28282105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 200 - 433
Target Start/End: Complemental strand, 28290624 - 28290390
Alignment:
| Q |
200 |
aacttacttgcagccgaagaaacctcctttcacattagctccagaaggatgttcagctttcagaatatgatgcttggtttgatcaattaagctgaatata |
299 |
Q |
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||||||||||||||| |||||||||| ||||||| | | || |||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |
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| T |
28290624 |
aacttacttgcagccaaagaaacctcttttcacagtcaacacggagggatgttcagcttttagaatgtgatgcttggtttgatcaattaagctgcatata |
28290525 |
T |
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| Q |
300 |
agaca--cccaaagtgagaagaataacttgcttgtcgcccattccgctaaaataaacaattatgccaaatttatagaatcaactaatggcagtactgaat |
397 |
Q |
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| T |
28290524 |
agacataccaaaagtaagcagaataacttgcttgtcacccattccgctaaaataaacaattacgccaaatttata-aatcaactaatggcagtaccgaat |
28290426 |
T |
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| Q |
398 |
tttctcctgagcatactctccccacagcagaaacac |
433 |
Q |
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| T |
28290425 |
tttctcctgagcagactctccccacatcagaaacac |
28290390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 29558158 - 29558432
Alignment:
| Q |
8 |
catatatatcactctgctgcgcacatcttttc-taatttactatttcttcataacaactgtctcatgtgcccttatatttcagacaaacttaagcctcgt |
106 |
Q |
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||||| |||||||||||||| || || ||||| |||||| |||||||||||||||| ||||||||||||| || | ||||||||||||||||||||||| |
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| T |
29558158 |
catatctatcactctgctgcacatattttttcctaatttggtatttcttcataacaaatgtctcatgtgccgttctttttcagacaaacttaagcctcgt |
29558257 |
T |
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| Q |
107 |
cgtgaatgcctattttatatatacattaagcagaaatttcaaacatactttacaacactgttatattaacacaataaaaataatgcaaaaactaacttac |
206 |
Q |
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| T |
29558258 |
tgtgaatacatat-----aaat-ca--aagcagaaagttcaaacatactttacaacactgttatattaacacaataaatataatgcaaaaacaaccttac |
29558349 |
T |
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| Q |
207 |
ttgcagccgaagaaacctcctttcacattagctccagaaggatgttcagctttcagaatatgatgcttggtttgatcaattaa |
289 |
Q |
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| T |
29558350 |
ttgcagccgaagaaacctcttttcacagtcaacacggaaggatgctcagctttcagaatgtgatgcttggtttgatcaattaa |
29558432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 122 - 225
Target Start/End: Complemental strand, 28278672 - 28278569
Alignment:
| Q |
122 |
tatatatacattaagcagaaatttcaaacatactttacaacactgttatattaacacaataaaaataatgcaaaaactaacttacttgcagccgaagaaa |
221 |
Q |
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|||| ||||| |||| ||||| ||||||||||||||| ||||||| ||||||||||||||||| | ||||||||||| |||||||||||||| |||||| |
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| T |
28278672 |
tatacatacactaagaagaaagttcaaacatactttataacactgctatattaacacaataaatagaatgcaaaaaccaacttacttgcagctaaagaaa |
28278573 |
T |
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| Q |
222 |
cctc |
225 |
Q |
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|||| |
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| T |
28278572 |
cctc |
28278569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 137 - 302
Target Start/End: Complemental strand, 19251309 - 19251144
Alignment:
| Q |
137 |
cagaaatttcaaacatactttacaacactgttatattaacacaataaaaataatgcaaaaactaacttacttgcagccgaagaaacctcctttcaca-tt |
235 |
Q |
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|||||| |||||||||| |||||||||||| |||||||||||| |||| || ||||||||| | ||||||||||||| ||||||||| ||||||| | |
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| T |
19251309 |
cagaaagttcaaacatattttacaacactgctatattaacacagtaaatattatgcaaaaatcatcttacttgcagccaaagaaaccttttttcacagtc |
19251210 |
T |
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| Q |
236 |
agctccagaaggatgttcagctttcagaatatgatgcttggtttgatcaattaagctgaatataaga |
302 |
Q |
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| T |
19251209 |
aact-cagagggatgtgcagcttttagaatgtgatgcttggttgcatcaattatgctgcacataaga |
19251144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 28303174 - 28303129
Alignment:
| Q |
398 |
tttctcctgagcatactctccccacagcagaaacacaagtccttcc |
443 |
Q |
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||||||||||||| ||| |||||||||||||||||||| ||||||| |
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| T |
28303174 |
tttctcctgagcagactttccccacagcagaaacacaactccttcc |
28303129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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