View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288-Insertion-12 (Length: 405)
Name: NF3288-Insertion-12
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288-Insertion-12 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 8 - 405
Target Start/End: Original strand, 1451392 - 1451789
Alignment:
| Q |
8 |
cgaccaataacttctttcggcaaa-tgtgttgcaaatgttgtggcttcagctccacgcaacagcctggatttggacaataaacattctttatgttgtgga |
106 |
Q |
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| T |
1451392 |
cgaccaataacttctttcggcaaaatgtgttgcaaatgttgtggctttagctccacgcaacagcctggatttggacaataaacattctttatgttgtgga |
1451491 |
T |
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| Q |
107 |
ttacctggtcagccacatgcttagatatacaattgtcacaaaaggggtgattgcatattgcacttcctctaacaatgtcagagtcttgtatgaaatcaaa |
206 |
Q |
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| T |
1451492 |
ttacttggtcagccacatgcttagatatacaattgtcacaaaaggggtgattgcatattgcacttcctcaaa-aatgtcagagtcttgtatgaaatcaaa |
1451590 |
T |
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| Q |
207 |
gcataaaccacaaaaggattttggaggtagtgaagaacattcacagctggtctcaatagtttctttcttcaactctttctcattacttgttactgaacat |
306 |
Q |
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| T |
1451591 |
gcataaaccacaaaaggattttggaggtagtgaagaacattcacagctggtctcaatagtttctttcttcaactctttctcattacttgttactgaacat |
1451690 |
T |
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| Q |
307 |
ttgagaatccctttcaaattttgttgttggaattcactacacttcactttcactgagttttgatttggttgatcaatggtgaatgtgactttcttcctc |
405 |
Q |
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| T |
1451691 |
ttgagaatccttttcaaattttgttgttggaattcattacacttcactttcactgagttttgatttggttgatcaatggtgaatgtgactttcttcctc |
1451789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 1455111 - 1455333
Alignment:
| Q |
8 |
cgaccaataacttctttcggcaaa-tgtgttgcaaatgttgtggcttcagctccacgcaacagcctggatttggacaataaacattctttatgttgtgga |
106 |
Q |
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| T |
1455111 |
cgaccaaccacttctttaggcaaaatatgttgcaaatactgtggcttcagttccacgctacagacaggatttggacaacaaattttctttatattttggc |
1455210 |
T |
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| Q |
107 |
ttacctggtcagccacatgcttagatatacaattgtcacaaaaggggtgattgcatattgcacttcctctaacaatgtcagagtcttgtatgaaatcaaa |
206 |
Q |
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| T |
1455211 |
ttagttgttcagccacatgcttagatatacaattggcacaaaactgatgattgcatatggtacttcctctgacaatattggcatctggtacgatatcata |
1455310 |
T |
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| Q |
207 |
gcataaaccacaaaaggattttg |
229 |
Q |
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| T |
1455311 |
gcataaatcacaaatggattttg |
1455333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 736354 - 736241
Alignment:
| Q |
116 |
cagccacatgcttagatatacaattgtcacaaaaggggtgattgcatattgcacttcctctaacaatgtcagagtcttgtatgaaatcaaagcataaacc |
215 |
Q |
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| T |
736354 |
cagccacatgattagatatacaattagcacaaaatggatggttacatgtgccactacctctaacaatatcattctctggtacaaaatcaaaacatacacc |
736255 |
T |
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| Q |
216 |
acaaaaggattttg |
229 |
Q |
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| T |
736254 |
acaaaaggattttg |
736241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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