View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288-Insertion-14 (Length: 395)
Name: NF3288-Insertion-14
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288-Insertion-14 |
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| [»] scaffold1425 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 175 - 330
Target Start/End: Original strand, 41637748 - 41637914
Alignment:
| Q |
175 |
taaataaagagatagattcaattgaattagaattgaaaagaaagagttgaaagtacccgtggtggcttgtttagaaacttgttcagc-----------ca |
263 |
Q |
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| T |
41637748 |
taaataaagagacagattcaattgaattagaattgaaaagaaagagttgaaagtacctgtggtggcttgtttggaaacttgttcagccatcttaatgaca |
41637847 |
T |
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| Q |
264 |
tcttcccaggcgactttgttatcgaaggaagaagaagaaggagtttgatccaaaacctgtagggttt |
330 |
Q |
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| T |
41637848 |
tcttcccaggttactttgtcatcgaaggaagaagaagaaagagtttgatccaaaacctgtagggttt |
41637914 |
T |
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Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 175 - 330
Target Start/End: Original strand, 50484597 - 50484763
Alignment:
| Q |
175 |
taaataaagagatagattcaattgaattagaattgaaaagaaagagttgaaagtacccgtggtggcttgtttagaaacttgttcagc-----------ca |
263 |
Q |
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| T |
50484597 |
taaataaagagacaaattcaattgaattagaattgaaaagaaagagttgaaagtacctgtggtggcttgtttggaaacttgttcagccatcttaatgaca |
50484696 |
T |
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| Q |
264 |
tcttcccaggcgactttgttatcgaaggaagaagaagaaggagtttgatccaaaacctgtagggttt |
330 |
Q |
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| T |
50484697 |
tcttcccatgttactttgtcattgaaggaagaagaagaaagagtttgatccaaaacctgtagggttt |
50484763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 214 - 395
Target Start/End: Complemental strand, 49277068 - 49276872
Alignment:
| Q |
214 |
gaaagagttgaaagtacccgtggtggcttgtttagaaacttgttcagccatctt-----------cccaggcgactttgttatcgaaggaagaagaagaa |
302 |
Q |
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| T |
49277068 |
gaaagagttgaaagtacctgtggtggcttgtttagaaacttgttcggccatcttaatgacatcttcccaggtgactttgttaacgaaagaagaagaagaa |
49276969 |
T |
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| Q |
303 |
g---gagtttgatccaaaacctgtagggtttcatggatggtggcgatttgtgaaact-agagaaggttcagacgctctttctctgctcttgctggca |
395 |
Q |
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| T |
49276968 |
gaaggagtttgatctaaaacttgaagggtttcatggattgtggcgaggtgtgaacctaagacaaggttcaggcgctctttctctgctcttgctggca |
49276872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 10570237 - 10570127
Alignment:
| Q |
63 |
aaacgcaacagagttggttgttaggtccaacacaacagaagaagaagaag---tatgtagatctgggttgtatcattgtctgccgtgcaagatctttgtt |
159 |
Q |
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| T |
10570237 |
aaacacaacagagttggttgttaggtccaacagaacagaagaagaagaagaaatatgtagatctgggttgtatcattgtcagcc--gcaagatctttgtt |
10570140 |
T |
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| Q |
160 |
tggactgttggaa |
172 |
Q |
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| T |
10570139 |
tggactgttggaa |
10570127 |
T |
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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 262 - 327
Target Start/End: Complemental strand, 48499754 - 48499689
Alignment:
| Q |
262 |
catcttcccaggcgactttgttatcgaaggaagaagaagaaggagtttgatccaaaacctgtaggg |
327 |
Q |
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| T |
48499754 |
catcttcccaggttactttgttatcgaaggaagaagaagaaagagtttgatccaaaacctgtaggg |
48499689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 48500533 - 48500482
Alignment:
| Q |
175 |
taaataaagagatagattcaattgaattagaattgaaaagaaagagttgaaa |
226 |
Q |
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| T |
48500533 |
taaataaagagacagattcaattgaattagaattgaaaagaaagagttgaaa |
48500482 |
T |
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Target: scaffold1425 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1425
Description:
Target: scaffold1425; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 646 - 608
Alignment:
| Q |
357 |
agagaaggttcagacgctctttctctgctcttgctggca |
395 |
Q |
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| T |
646 |
agagaaggttaagacgctctttctctgctcttgctggca |
608 |
T |
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